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  5. AT3G03550

AT3G03550


Description : RING/U-box superfamily protein


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0001298 (SeedPlants) Phylogenetic Tree(s): OG_06_0001298_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G03550
Cluster HCCA: Cluster_212

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00203540 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00006p00267830 evm_27.TU.AmTr_v1... Nutrient uptake.iron uptake.regulation.IDF1 IRT1-ubiquitin ligase 0.04 Archaeplastida
AMTR_s00007p00056710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00019p00149380 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00030p00032810 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00088p00040490 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00152p00054630 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
AT1G22500 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT1G53010 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT1G63840 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT2G17450 RHA3A RING-H2 finger A3A 0.07 Archaeplastida
AT2G37580 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT3G16720 ATL2, TL2 TOXICOS EN LEVADURA 2 0.04 Archaeplastida
AT3G43430 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT4G09100 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G17905 ATL4H RING/U-box superfamily protein 0.05 Archaeplastida
AT4G24015 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT5G06490 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G53110 No alias RING/U-box superfamily protein 0.04 Archaeplastida
GSVIVT01000015001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
GSVIVT01008756001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01009096001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01012018001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01027769001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01028038001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_03946 No alias no hits & (original description: none) 0.07 Archaeplastida
Gb_05005 No alias E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis... 0.02 Archaeplastida
Gb_05381 No alias RHA2 signal transducer of abscisic acid perception 0.04 Archaeplastida
Gb_08038 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Gb_14777 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Gb_14778 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_15297 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Gb_20666 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_22087 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Gb_28973 No alias Probable E3 ubiquitin-protein ligase RHA1A... 0.04 Archaeplastida
Gb_28980 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_32878 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Gb_35043 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os01g11490.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os01g11500.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os01g64620.1 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os02g08200.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os02g36330.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os02g46600.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os02g54830.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os03g05560.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os03g05570.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os03g57410.1 No alias Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os04g16970.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os04g49700.1 No alias E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os06g06150.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os06g07100.2 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os06g08820.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os06g09310.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os06g11450.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os06g12680.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os06g16060.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os06g50370.1 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os07g06560.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os09g29310.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os09g37050.1 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os09g38110.1 No alias RING-H2 finger protein ATL80 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os10g39450.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os10g39770.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os11g39640.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_10021g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_10436104g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_17249g0010 No alias Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.05 Archaeplastida
MA_177169g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_26001g0020 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_280399g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_289646g0010 No alias E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis... 0.02 Archaeplastida
MA_31736g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_391931g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_402876g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_43543g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_462422g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_61738g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_634100g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_6475030g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_8556123g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_8710804g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_904294g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_9143538g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c20_12240V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c23_10580V3.1 No alias RING/U-box superfamily protein 0.04 Archaeplastida
Pp3c26_11650V3.1 No alias TOXICOS EN LEVADURA 2 0.06 Archaeplastida
Pp3c4_30240V3.1 No alias TOXICOS EN LEVADURA 2 0.04 Archaeplastida
Pp3c6_19030V3.1 No alias RING/U-box superfamily protein 0.04 Archaeplastida
Smo438800 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Solyc01g066430.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc01g088440.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc02g083400.3.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc02g083660.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc04g074820.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc04g081890.1.1 No alias E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis... 0.05 Archaeplastida
Solyc05g008640.1.1 No alias RHA2 signal transducer of abscisic acid perception 0.03 Archaeplastida
Solyc05g010175.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc06g061250.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc09g089890.1.1 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
Solyc11g005290.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc11g005320.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc12g005020.2.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc12g055710.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc12g087840.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc12g094690.1.1 No alias RING-H2 finger protein ATL8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e000398_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e002272_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e003264_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e007103_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e007956_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e009017_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e014302_P001 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Zm00001e014709_P001 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
Zm00001e014832_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e015470_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e015495_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e016470_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e019438_P001 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e019779_P001 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Zm00001e020958_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e023238_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e023908_P006 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e030930_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e032838_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e034421_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e036289_P001 No alias no hits & (original description: none) 0.08 Archaeplastida
Zm00001e036691_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e041824_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
BP GO:0080167 response to karrikin IEP Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0004013 adenosylhomocysteinase activity IEP Neighborhood
MF GO:0004693 cyclin-dependent protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
CC GO:0005768 endosome IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006096 glycolytic process IEP Neighborhood
BP GO:0006163 purine nucleotide metabolic process IEP Neighborhood
BP GO:0006164 purine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Neighborhood
BP GO:0006598 polyamine catabolic process IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006730 one-carbon metabolic process IEP Neighborhood
BP GO:0006732 coenzyme metabolic process IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
BP GO:0006754 ATP biosynthetic process IEP Neighborhood
BP GO:0006757 ATP generation from ADP IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006833 water transport IEP Neighborhood
BP GO:0006858 extracellular transport IEP Neighborhood
BP GO:0006972 hyperosmotic response IEP Neighborhood
BP GO:0007030 Golgi organization IEP Neighborhood
BP GO:0007267 cell-cell signaling IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009108 coenzyme biosynthetic process IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009123 nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009132 nucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009141 nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009150 purine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009166 nucleotide catabolic process IEP Neighborhood
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Neighborhood
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Neighborhood
BP GO:0009259 ribonucleotide metabolic process IEP Neighborhood
CC GO:0009504 cell plate IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
BP GO:0009608 response to symbiont IEP Neighborhood
BP GO:0009610 response to symbiotic fungus IEP Neighborhood
BP GO:0009832 plant-type cell wall biogenesis IEP Neighborhood
BP GO:0009833 plant-type primary cell wall biogenesis IEP Neighborhood
BP GO:0010038 response to metal ion IEP Neighborhood
BP GO:0010383 cell wall polysaccharide metabolic process IEP Neighborhood
BP GO:0010410 hemicellulose metabolic process IEP Neighborhood
BP GO:0010413 glucuronoxylan metabolic process IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
BP GO:0016052 carbohydrate catabolic process IEP Neighborhood
BP GO:0016125 sterol metabolic process IEP Neighborhood
BP GO:0016126 sterol biosynthetic process IEP Neighborhood
BP GO:0016128 phytosteroid metabolic process IEP Neighborhood
BP GO:0016129 phytosteroid biosynthetic process IEP Neighborhood
BP GO:0016131 brassinosteroid metabolic process IEP Neighborhood
BP GO:0016132 brassinosteroid biosynthetic process IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016801 hydrolase activity, acting on ether bonds IEP Neighborhood
MF GO:0016802 trialkylsulfonium hydrolase activity IEP Neighborhood
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Neighborhood
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Neighborhood
BP GO:0019693 ribose phosphate metabolic process IEP Neighborhood
BP GO:0019852 L-ascorbic acid metabolic process IEP Neighborhood
BP GO:0019853 L-ascorbic acid biosynthetic process IEP Neighborhood
BP GO:0023052 signaling IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
CC GO:0031410 cytoplasmic vesicle IEP Neighborhood
CC GO:0031982 vesicle IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
BP GO:0042044 fluid transport IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
BP GO:0042866 pyruvate biosynthetic process IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044038 cell wall macromolecule biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
BP GO:0045491 xylan metabolic process IEP Neighborhood
BP GO:0045492 xylan biosynthetic process IEP Neighborhood
BP GO:0046031 ADP metabolic process IEP Neighborhood
BP GO:0046034 ATP metabolic process IEP Neighborhood
BP GO:0046364 monosaccharide biosynthetic process IEP Neighborhood
BP GO:0046434 organophosphate catabolic process IEP Neighborhood
BP GO:0046685 response to arsenic-containing substance IEP Neighborhood
BP GO:0046686 response to cadmium ion IEP Neighborhood
BP GO:0046939 nucleotide phosphorylation IEP Neighborhood
MF GO:0046982 protein heterodimerization activity IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048588 developmental cell growth IEP Neighborhood
BP GO:0048589 developmental growth IEP Neighborhood
BP GO:0048767 root hair elongation IEP Neighborhood
MF GO:0050105 L-gulonolactone oxidase activity IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0051188 cofactor biosynthetic process IEP Neighborhood
BP GO:0060560 developmental growth involved in morphogenesis IEP Neighborhood
BP GO:0070589 cellular component macromolecule biosynthetic process IEP Neighborhood
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0072521 purine-containing compound metabolic process IEP Neighborhood
BP GO:0072522 purine-containing compound biosynthetic process IEP Neighborhood
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Neighborhood
MF GO:0097472 cyclin-dependent protein kinase activity IEP Neighborhood
CC GO:0097708 intracellular vesicle IEP Neighborhood
BP GO:1901292 nucleoside phosphate catabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 158 201
No external refs found!