Gb_39001

Description : Probable polygalacturonase OS=Vitis vinifera (sp|a7pzl3|pglr_vitvi : 269.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 69.8)

Gene families : OG0000349 (Archaeplastida) Phylogenetic Tree(s): OG0000349_tree ,
OG_05_0000329 (LandPlants) Phylogenetic Tree(s): OG_05_0000329_tree ,
OG_06_0001972 (SeedPlants) Phylogenetic Tree(s): OG_06_0001972_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_39001
Cluster	HCCA: Cluster_214

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00258260	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.02	Archaeplastida
AMTR_s00003p00141260	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.05	Archaeplastida
AMTR_s00045p00118570	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.02	Archaeplastida
AMTR_s00107p00122980	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.02	Archaeplastida
AT1G19170	No alias	Pectin lyase-like superfamily protein	0.05	Archaeplastida
AT3G06770	No alias	Pectin lyase-like superfamily protein	0.08	Archaeplastida
AT3G16850	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT3G42950	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT4G23820	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
AT5G41870	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
GSVIVT01019516001	No alias	Probable polygalacturonase OS=Vitis vinifera	0.04	Archaeplastida
GSVIVT01026985001	No alias	Probable polygalacturonase OS=Vitis vinifera	0.04	Archaeplastida
GSVIVT01028246001	No alias	Probable polygalacturonase OS=Vitis vinifera	0.03	Archaeplastida
GSVIVT01035089001	No alias	Probable polygalacturonase OS=Vitis vinifera	0.04	Archaeplastida
LOC_Os01g43160.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.06	Archaeplastida
LOC_Os02g15690.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.04	Archaeplastida
LOC_Os05g50960.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
LOC_Os11g43750.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.05	Archaeplastida
LOC_Os12g36810.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.04	Archaeplastida
MA_10430135g0020	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.06	Archaeplastida
MA_10435166g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
Mp7g13870.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
Pp3c19_14240V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c6_7160V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Smo78556	No alias	Probable polygalacturonase OS=Vitis vinifera	0.02	Archaeplastida
Solyc05g049980.3.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.02	Archaeplastida
Solyc06g009790.4.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.04	Archaeplastida
Solyc07g042160.3.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.05	Archaeplastida
Solyc08g081480.3.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
Solyc09g075460.3.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.05	Archaeplastida
Zm00001e006249_P001	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.08	Archaeplastida
Zm00001e023760_P001	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
Zm00001e034257_P001	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
Zm00001e039674_P002	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	Neighborhood
MF	GO:0003924	GTPase activity	IEP	Neighborhood
MF	GO:0004568	chitinase activity	IEP	Neighborhood
BP	GO:0006022	aminoglycan metabolic process	IEP	Neighborhood
BP	GO:0006026	aminoglycan catabolic process	IEP	Neighborhood
BP	GO:0006030	chitin metabolic process	IEP	Neighborhood
BP	GO:0006032	chitin catabolic process	IEP	Neighborhood
BP	GO:0006040	amino sugar metabolic process	IEP	Neighborhood
BP	GO:0007010	cytoskeleton organization	IEP	Neighborhood
MF	GO:0008092	cytoskeletal protein binding	IEP	Neighborhood
MF	GO:0008417	fucosyltransferase activity	IEP	Neighborhood
BP	GO:0010215	cellulose microfibril organization	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
BP	GO:0030198	extracellular matrix organization	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
MF	GO:0033926	glycopeptide alpha-N-acetylgalactosaminidase activity	IEP	Neighborhood
BP	GO:0043062	extracellular structure organization	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
BP	GO:0046348	amino sugar catabolic process	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	Neighborhood
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Neighborhood
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR024535	Pectate_lyase_SF_prot	210	267
IPR000743	Glyco_hydro_28	327	423
IPR000743	Glyco_hydro_28	525	710

External Links

No external refs found!

Gb_39001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation