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  5. AT3G04180

AT3G04180


Description : RmlC-like cupins superfamily protein


Gene families : OG0000034 (Archaeplastida) Phylogenetic Tree(s): OG0000034_tree ,
OG_05_0000016 (LandPlants) Phylogenetic Tree(s): OG_05_0000016_tree ,
OG_06_0000030 (SeedPlants) Phylogenetic Tree(s): OG_06_0000030_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G04180
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00231430 evm_27.TU.AmTr_v1... Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00045p00155350 evm_27.TU.AmTr_v1... Germin-like protein 5-1 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
AMTR_s00089p00119480 evm_27.TU.AmTr_v1... Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
AMTR_s00089p00120230 evm_27.TU.AmTr_v1... Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
AMTR_s00089p00122070 evm_27.TU.AmTr_v1... Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
AT3G05930 GLP8 germin-like protein 8 0.03 Archaeplastida
AT5G39130 No alias RmlC-like cupins superfamily protein 0.03 Archaeplastida
GSVIVT01000097001 No alias Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01000098001 No alias Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01000101001 No alias Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01016761001 No alias Auxin-binding protein ABP19a OS=Prunus persica 0.04 Archaeplastida
GSVIVT01031079001 No alias Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_10685 No alias Putative germin-like protein 3-2 OS=Oryza sativa subsp.... 0.04 Archaeplastida
Gb_30305 No alias Germin-like protein subfamily 2 member 1 OS=Arabidopsis... 0.04 Archaeplastida
MA_10345692g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10427432g0020 No alias Putative germin-like protein 2-2 OS=Oryza sativa subsp.... 0.04 Archaeplastida
MA_5449g0010 No alias Germin-like protein subfamily 3 member 2 OS=Arabidopsis... 0.03 Archaeplastida
MA_828526g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp5g16550.1 No alias Germin-like protein 3-6 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Pp3c17_21150V3.1 No alias RmlC-like cupins superfamily protein 0.02 Archaeplastida
Pp3c17_21300V3.1 No alias RmlC-like cupins superfamily protein 0.02 Archaeplastida
Pp3c23_1370V3.1 No alias germin-like protein 5 0.05 Archaeplastida
Pp3c23_1379V3.1 No alias germin-like protein 5 0.05 Archaeplastida
Pp3c23_1399V3.1 No alias germin-like protein 5 0.02 Archaeplastida
Pp3c23_1420V3.1 No alias germin-like protein 5 0.03 Archaeplastida
Pp3c3_16510V3.1 No alias germin-like protein subfamily 2 member 2 precursor 0.04 Archaeplastida
Smo89841 No alias Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana 0.03 Archaeplastida
Smo99342 No alias Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc01g088275.1.1 No alias Germin-like protein 8-2 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Solyc01g102380.5.1.1 No alias Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana... 0.02 Archaeplastida
Solyc09g090005.1.1 No alias Germin-like protein subfamily 1 member 7 OS=Arabidopsis... 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0006869 lipid transport IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009685 gibberellin metabolic process IEP Neighborhood
BP GO:0009686 gibberellin biosynthetic process IEP Neighborhood
BP GO:0016101 diterpenoid metabolic process IEP Neighborhood
BP GO:0016102 diterpenoid biosynthetic process IEP Neighborhood
MF GO:0016405 CoA-ligase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0016878 acid-thiol ligase activity IEP Neighborhood
MF GO:0018858 benzoate-CoA ligase activity IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
InterPro domains Description Start Stop
IPR006045 Cupin_1 65 215
No external refs found!