Gb_39221

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 143.0)

Gene families : OG0000364 (Archaeplastida) Phylogenetic Tree(s): OG0000364_tree ,
OG_05_0000134 (LandPlants) Phylogenetic Tree(s): OG_05_0000134_tree ,
OG_06_0000108 (SeedPlants) Phylogenetic Tree(s): OG_06_0000108_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_39221
Cluster	HCCA: Cluster_51

Target	Alias	Description	ECC score	Gene Family Method
Gb_00288	No alias	no hits & (original description: none)	0.01	Archaeplastida
Gb_00434	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	Archaeplastida
Gb_08095	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.01	Archaeplastida
Gb_08402	No alias	no hits & (original description: none)	0.04	Archaeplastida
Gb_08666	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.12	Archaeplastida
Gb_09514	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	Archaeplastida
Gb_10876	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_13443	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.14	Archaeplastida
Gb_15820	No alias	no hits & (original description: none)	0.06	Archaeplastida
Gb_16799	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.01	Archaeplastida
Gb_20056	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.14	Archaeplastida
Gb_21118	No alias	no hits & (original description: none)	0.2	Archaeplastida
Gb_25995	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_28600	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	Archaeplastida
Gb_33414	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	Archaeplastida
Gb_38122	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	Archaeplastida
Gb_39764	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Gb_40384	No alias	no hits & (original description: none)	0.02	Archaeplastida
Gb_41697	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR025724	GAG-pre-integrase_dom	59	110
IPR001584	Integrase_cat-core	124	224

External Links

No external refs found!

Gb_39221

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation