AT1G11920

Description : Pectin lyase-like superfamily protein

Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G11920

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00014p00175040	evm_27.TU.AmTr_v1...	Putative pectate lyase 2 OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00120p00111300	evm_27.TU.AmTr_v1...	Cell wall.pectin.modification and degradation.pectate lyase	0.03	Archaeplastida
AT3G24230	No alias	Pectate lyase family protein	0.03	Archaeplastida
AT3G24670	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
AT3G27400	No alias	Pectin lyase-like superfamily protein	0.08	Archaeplastida
AT5G09280	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT5G48900	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
GSVIVT01003984001	No alias	Cell wall.pectin.modification and degradation.pectate lyase	0.05	Archaeplastida
GSVIVT01016209001	No alias	Cell wall.pectin.modification and degradation.pectate lyase	0.07	Archaeplastida
GSVIVT01028548001	No alias	Cell wall.pectin.modification and degradation.pectate lyase	0.02	Archaeplastida
GSVIVT01033671001	No alias	Cell wall.pectin.modification and degradation.pectate lyase	0.04	Archaeplastida
LOC_Os04g05050.1	No alias	pectate lyase	0.04	Archaeplastida
MA_101171g0010	No alias	pectate lyase	0.06	Archaeplastida
MA_10205415g0010	No alias	pectate lyase	0.03	Archaeplastida
MA_10426822g0020	No alias	pectate lyase	0.06	Archaeplastida
MA_10428603g0020	No alias	pectate lyase	0.03	Archaeplastida
MA_10430145g0030	No alias	pectate lyase	0.04	Archaeplastida
MA_10437227g0010	No alias	pectate lyase	0.04	Archaeplastida
MA_1164682g0010	No alias	pectate lyase	0.03	Archaeplastida
MA_170547g0010	No alias	pectate lyase	0.03	Archaeplastida
MA_474372g0010	No alias	pectate lyase	0.07	Archaeplastida
MA_476625g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_6474333g0010	No alias	Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen...	0.05	Archaeplastida
MA_91467g0020	No alias	pectate lyase	0.04	Archaeplastida
MA_956526g0010	No alias	pectate lyase	0.04	Archaeplastida
MA_97947g0010	No alias	pectate lyase	0.04	Archaeplastida
Pp3c10_20140V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Pp3c1_4040V3.1	No alias	Pectin lyase-like superfamily protein	0.08	Archaeplastida
Pp3c3_20320V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c3_35190V3.1	No alias	Pectin lyase-like superfamily protein	0.08	Archaeplastida
Solyc02g093580.4.1	No alias	pectate lyase	0.02	Archaeplastida
Solyc03g111690.4.1	No alias	pectate lyase	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
MF	GO:0016829	lyase activity	ISS	Interproscan
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	None	Extended
MF	GO:0030570	pectate lyase activity	ISS	Interproscan

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003682	chromatin binding	IEP	Neighborhood
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	Neighborhood
BP	GO:0010528	regulation of transposition	IEP	Neighborhood
BP	GO:0010529	negative regulation of transposition	IEP	Neighborhood
BP	GO:0010639	negative regulation of organelle organization	IEP	Neighborhood
BP	GO:0031056	regulation of histone modification	IEP	Neighborhood
BP	GO:0031057	negative regulation of histone modification	IEP	Neighborhood
BP	GO:0031058	positive regulation of histone modification	IEP	Neighborhood
BP	GO:0031060	regulation of histone methylation	IEP	Neighborhood
BP	GO:0031062	positive regulation of histone methylation	IEP	Neighborhood
BP	GO:0031400	negative regulation of protein modification process	IEP	Neighborhood
BP	GO:0031401	positive regulation of protein modification process	IEP	Neighborhood
MF	GO:0031490	chromatin DNA binding	IEP	Neighborhood
BP	GO:0032269	negative regulation of cellular protein metabolic process	IEP	Neighborhood
BP	GO:0032270	positive regulation of cellular protein metabolic process	IEP	Neighborhood
BP	GO:0035065	regulation of histone acetylation	IEP	Neighborhood
BP	GO:0035067	negative regulation of histone acetylation	IEP	Neighborhood
BP	GO:0048577	negative regulation of short-day photoperiodism, flowering	IEP	Neighborhood
BP	GO:0048587	regulation of short-day photoperiodism, flowering	IEP	Neighborhood
BP	GO:0048658	anther wall tapetum development	IEP	Neighborhood
BP	GO:0051129	negative regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Neighborhood
BP	GO:0051248	negative regulation of protein metabolic process	IEP	Neighborhood
BP	GO:0051570	regulation of histone H3-K9 methylation	IEP	Neighborhood
BP	GO:0051574	positive regulation of histone H3-K9 methylation	IEP	Neighborhood
BP	GO:1900109	regulation of histone H3-K9 dimethylation	IEP	Neighborhood
BP	GO:1900111	positive regulation of histone H3-K9 dimethylation	IEP	Neighborhood
BP	GO:1901983	regulation of protein acetylation	IEP	Neighborhood
BP	GO:1901984	negative regulation of protein acetylation	IEP	Neighborhood
BP	GO:1902275	regulation of chromatin organization	IEP	Neighborhood
BP	GO:1905268	negative regulation of chromatin organization	IEP	Neighborhood
BP	GO:1905269	positive regulation of chromatin organization	IEP	Neighborhood
BP	GO:2000028	regulation of photoperiodism, flowering	IEP	Neighborhood
BP	GO:2000242	negative regulation of reproductive process	IEP	Neighborhood
BP	GO:2000756	regulation of peptidyl-lysine acetylation	IEP	Neighborhood
BP	GO:2000757	negative regulation of peptidyl-lysine acetylation	IEP	Neighborhood
BP	GO:2001251	negative regulation of chromosome organization	IEP	Neighborhood
BP	GO:2001252	positive regulation of chromosome organization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002022	Pec_lyase	118	301

External Links

No external refs found!

AT1G11920

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation