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  5. Gb_39591

Gb_39591


Description : Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana (sp|q9fx45|orrm6_arath : 113.0)


Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0001165 (LandPlants) Phylogenetic Tree(s): OG_05_0001165_tree ,
OG_06_0000918 (SeedPlants) Phylogenetic Tree(s): OG_06_0000918_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_39591
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00202090 evm_27.TU.AmTr_v1... RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00061p00142700 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00166p00060690 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AT1G73530 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Archaeplastida
AT3G52380 PDE322, CP33 chloroplast RNA-binding protein 33 0.03 Archaeplastida
AT4G24770 ATRBP31, CP31,... 31-kDa RNA binding protein 0.04 Archaeplastida
Cre01.g032300 No alias No description available 0.02 Archaeplastida
GSVIVT01007596001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
GSVIVT01027917001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.05 Archaeplastida
GSVIVT01032361001 No alias RNA processing.organelle machineries.RNA... 0.07 Archaeplastida
LOC_Os02g57010.1 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.03 Archaeplastida
LOC_Os03g25960.1 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.07 Archaeplastida
LOC_Os08g44290.1 No alias RNA editing factor (CP31) 0.03 Archaeplastida
LOC_Os09g39180.1 No alias RNA editing factor (CP31) 0.03 Archaeplastida
MA_367032g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_474396g0010 No alias RNA editing factor (CP31) 0.04 Archaeplastida
MA_7844926g0010 No alias Organelle RRM domain-containing protein 1, chloroplastic... 0.02 Archaeplastida
Mp2g13800.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.09 Archaeplastida
Mp3g24820.1 No alias RNA-binding protein CP31B, chloroplastic OS=Arabidopsis... 0.05 Archaeplastida
Mp8g03420.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.02 Archaeplastida
Pp3c12_9890V3.1 No alias chloroplast RNA-binding protein 29 0.05 Archaeplastida
Pp3c24_17170V3.1 No alias chloroplast RNA-binding protein 29 0.02 Archaeplastida
Solyc01g006940.4.1 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.04 Archaeplastida
Solyc03g111840.3.1 No alias RNA editing factor (CP31) 0.05 Archaeplastida
Solyc09g007850.3.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.06 Archaeplastida
Solyc09g090960.4.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 Archaeplastida
Solyc10g086150.2.1 No alias 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.05 Archaeplastida
Zm00001e003947_P001 No alias RNA editing factor (CP31) 0.06 Archaeplastida
Zm00001e016211_P001 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.02 Archaeplastida
Zm00001e022086_P002 No alias RNA editing factor (CP31) 0.07 Archaeplastida
Zm00001e032835_P001 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.08 Archaeplastida
Zm00001e033465_P001 No alias RNA editing factor (CP31) 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 82 151
No external refs found!