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  5. Gb_39944

Gb_39944


Description : histone (H2A)


Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0000204 (LandPlants) Phylogenetic Tree(s): OG_05_0000204_tree ,
OG_06_0000166 (SeedPlants) Phylogenetic Tree(s): OG_06_0000166_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_39944
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00215390 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
AMTR_s00058p00158560 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
AMTR_s00115p00128810 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.04 Archaeplastida
AT1G51060 HTA10 histone H2A 10 0.03 Archaeplastida
AT5G59870 HTA6 histone H2A 6 0.02 Archaeplastida
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre13.g590800 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre13.g591150 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
GSVIVT01011034001 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Gb_37579 No alias histone (H2A) 0.04 Archaeplastida
LOC_Os01g31800.1 No alias histone (H2A) 0.02 Archaeplastida
LOC_Os08g33100.1 No alias histone (H2A) 0.03 Archaeplastida
MA_169054g0020 No alias histone (H2A) 0.04 Archaeplastida
MA_74667g0010 No alias histone (H2A) 0.06 Archaeplastida
MA_962778g0010 No alias histone (H2A) 0.07 Archaeplastida
Mp2g00760.1 No alias histone (H2A) 0.06 Archaeplastida
Mp3g00840.1 No alias histone (H2A) 0.04 Archaeplastida
Pp3c4_5733V3.1 No alias histone H2A 13 0.02 Archaeplastida
Pp3c6_29410V3.1 No alias histone H2A 10 0.03 Archaeplastida
Smo166626 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Smo170948 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Smo73637 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Smo76653 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Solyc01g099410.3.1 No alias histone (H2A) 0.05 Archaeplastida
Solyc06g084430.4.1 No alias histone (H2A) 0.04 Archaeplastida
Solyc09g074300.1.1 No alias histone (H2A) 0.08 Archaeplastida
Solyc09g082710.3.1 No alias histone (H2A) 0.04 Archaeplastida
Solyc11g073260.2.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc12g005270.2.1 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e010516_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e011643_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e020483_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e033014_P001 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e034815_P001 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e039735_P001 No alias histone (H2A) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Neighborhood
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 12 92
IPR032454 Histone_H2A_C 95 128
No external refs found!