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  5. Gb_39948

Gb_39948


Description : DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica (sp|q650t9|rh7_orysj : 342.0)


Gene families : OG0000607 (Archaeplastida) Phylogenetic Tree(s): OG0000607_tree ,
OG_05_0003428 (LandPlants) Phylogenetic Tree(s): OG_05_0003428_tree ,
OG_06_0003705 (SeedPlants) Phylogenetic Tree(s): OG_06_0003705_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_39948
Cluster HCCA: Cluster_248

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00191130 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.02 Archaeplastida
AT3G22330 PMH2, ATRH53 putative mitochondrial RNA helicase 2 0.04 Archaeplastida
Gb_35745 No alias RH3 plastidial RNA basal splicing factor 0.02 Archaeplastida
LOC_Os03g61220.1 No alias RH3 plastidial RNA basal splicing factor 0.02 Archaeplastida
MA_10425844g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c1_40060V3.1 No alias DEAD box RNA helicase (RH3) 0.02 Archaeplastida
Solyc03g007010.4.1 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia... 0.05 Archaeplastida
Solyc06g035450.4.1 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia... 0.03 Archaeplastida
Solyc12g006320.3.1 No alias RNA helicase (PMH) 0.05 Archaeplastida
Zm00001e003219_P001 No alias RNA helicase (PMH) 0.02 Archaeplastida
Zm00001e011716_P001 No alias RH3 plastidial RNA basal splicing factor 0.02 Archaeplastida
Zm00001e018107_P001 No alias RNA helicase (PMH) 0.03 Archaeplastida
Zm00001e034728_P002 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
InterPro domains Description Start Stop
IPR012562 GUCT 171 266
IPR001650 Helicase_C 13 81
No external refs found!