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  5. Gb_40206

Gb_40206


Description : Photosystem II CP47 reaction center protein OS=Cryptomeria japonica (sp|b1vkc1|psbb_cryja : 535.0)


Gene families : OG0002438 (Archaeplastida) Phylogenetic Tree(s): OG0002438_tree ,
OG_05_0001920 (LandPlants) Phylogenetic Tree(s): OG_05_0001920_tree ,
OG_06_0001593 (SeedPlants) Phylogenetic Tree(s): OG_06_0001593_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_40206
Cluster HCCA: Cluster_297

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00585p00000100 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.03 Archaeplastida
ATCG00680 PSBB photosystem II reaction center protein B 0.03 Archaeplastida
GSVIVT01006503001 No alias Photosystem II CP47 reaction center protein OS=Phaseolus vulgaris 0.02 Archaeplastida
LOC_Os06g39708.1 No alias component PsbB/CP47 of PS-II reaction center complex 0.04 Archaeplastida
LOC_Os09g04680.1 No alias Photosystem II CP47 reaction center protein OS=Oryza... 0.04 Archaeplastida
LOC_Os10g21310.1 No alias component PsbB/CP47 of PS-II reaction center complex 0.04 Archaeplastida
LOC_Os12g10600.1 No alias Photosystem II CP47 reaction center protein OS=Oryza... 0.02 Archaeplastida
Mpzg01020.1 No alias component PsbB/CP47 of PS-II reaction center complex 0.02 Archaeplastida
Smo137729 No alias Photosystem II CP47 reaction center protein OS=Angiopteris evecta 0.04 Archaeplastida
Solyc00g500024.1.1 No alias component PsbB/CP47 of PS-II reaction center complex 0.03 Archaeplastida
Solyc00g500071.1.1 No alias component PsbB/CP47 of PS-II reaction center complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA Interproscan
BP GO:0009767 photosynthetic electron transport chain IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016168 chlorophyll binding IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Neighborhood
CC GO:0008290 F-actin capping protein complex IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
BP GO:0010639 negative regulation of organelle organization IEP Neighborhood
BP GO:0015977 carbon fixation IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP Neighborhood
BP GO:0030832 regulation of actin filament length IEP Neighborhood
BP GO:0030833 regulation of actin filament polymerization IEP Neighborhood
BP GO:0030834 regulation of actin filament depolymerization IEP Neighborhood
BP GO:0030835 negative regulation of actin filament depolymerization IEP Neighborhood
BP GO:0030837 negative regulation of actin filament polymerization IEP Neighborhood
BP GO:0031333 negative regulation of protein complex assembly IEP Neighborhood
BP GO:0032271 regulation of protein polymerization IEP Neighborhood
BP GO:0032272 negative regulation of protein polymerization IEP Neighborhood
BP GO:0032535 regulation of cellular component size IEP Neighborhood
BP GO:0032956 regulation of actin cytoskeleton organization IEP Neighborhood
BP GO:0032970 regulation of actin filament-based process IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0043242 negative regulation of protein complex disassembly IEP Neighborhood
BP GO:0043244 regulation of protein complex disassembly IEP Neighborhood
BP GO:0043254 regulation of protein complex assembly IEP Neighborhood
BP GO:0044087 regulation of cellular component biogenesis IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0051016 barbed-end actin filament capping IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051129 negative regulation of cellular component organization IEP Neighborhood
BP GO:0051493 regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051494 negative regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051693 actin filament capping IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090066 regulation of anatomical structure size IEP Neighborhood
BP GO:0110053 regulation of actin filament organization IEP Neighborhood
BP GO:1901879 regulation of protein depolymerization IEP Neighborhood
BP GO:1901880 negative regulation of protein depolymerization IEP Neighborhood
BP GO:1902903 regulation of supramolecular fiber organization IEP Neighborhood
BP GO:1902904 negative regulation of supramolecular fiber organization IEP Neighborhood
InterPro domains Description Start Stop
IPR000932 PS_antenna-like 1 336
No external refs found!