Gb_40955

Description : 50S ribosomal protein L16, chloroplastic OS=Physcomitrella patens subsp. patens (sp|q6yxk9|rk16_phypa : 127.0)

Gene families : OG0002172 (Archaeplastida) Phylogenetic Tree(s): OG0002172_tree ,
OG_05_0002418 (LandPlants) Phylogenetic Tree(s): OG_05_0002418_tree ,
OG_06_0003781 (SeedPlants) Phylogenetic Tree(s): OG_06_0003781_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_40955
Cluster	HCCA: Cluster_30

Target	Alias	Description	ECC score	Gene Family Method
ATCG00790	RPL16	ribosomal protein L16	0.03	Archaeplastida
ATMG00080	RPL16	ribosomal protein L16	0.05	Archaeplastida
LOC_Os01g57958.1	No alias	50S ribosomal protein L16, chloroplastic OS=Oryza nivara...	0.11	Archaeplastida
LOC_Os04g16826.1	No alias	50S ribosomal protein L16, chloroplastic OS=Oryza nivara...	0.1	Archaeplastida
LOC_Os05g22724.1	No alias	50S ribosomal protein L16, chloroplastic OS=Oryza nivara...	0.04	Archaeplastida
LOC_Os10g21344.1	No alias	50S ribosomal protein L16, chloroplastic OS=Oryza nivara...	0.1	Archaeplastida
LOC_Os12g34128.1	No alias	component mtRPL16 of large ribosomal subunit proteome	0.04	Archaeplastida
Mp1g22400.1	No alias	60S ribosomal protein L16, mitochondrial OS=Marchantia...	0.08	Archaeplastida
Mp6g01250.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Pp3c2_23477V3.1	No alias	ribosomal protein L16	0.04	Archaeplastida
Solyc00g500032.1.1	No alias	50S ribosomal protein L16, chloroplastic OS=Atropa...	0.04	Archaeplastida
Solyc00g500077.1.1	No alias	50S ribosomal protein L16, chloroplastic OS=Atropa...	0.04	Archaeplastida
Solyc05g045840.1.1	No alias	60S ribosomal protein L16, mitochondrial OS=Arabidopsis...	0.03	Archaeplastida
Solyc08g074700.1.1	No alias	component mtRPL16 of large ribosomal subunit proteome	0.03	Archaeplastida
Solyc09g015860.1.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
Solyc10g006910.3.1	No alias	50S ribosomal protein L16, chloroplastic OS=Nicotiana...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
CC	GO:0009521	photosystem	IEP	Neighborhood
CC	GO:0009522	photosystem I	IEP	Neighborhood
CC	GO:0009579	thylakoid	IEP	Neighborhood
BP	GO:0015979	photosynthesis	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
BP	GO:0018130	heterocycle biosynthetic process	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
CC	GO:0044436	thylakoid part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR016180	Ribosomal_L10e/L16	55	131

External Links

No external refs found!

Gb_40955

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation