AT3G05740 (RECQI1)

Aliases : RECQI1

Description : RECQ helicase l1

Gene families : OG0000499 (Archaeplastida) Phylogenetic Tree(s): OG0000499_tree ,
OG_05_0008353 (LandPlants) Phylogenetic Tree(s): OG_05_0008353_tree ,
OG_06_0009781 (SeedPlants) Phylogenetic Tree(s): OG_06_0009781_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G05740
Cluster	HCCA: Cluster_55

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020961.28	No alias	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.01	Archaeplastida
Cre12.g490150	No alias	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.03	Archaeplastida
Solyc08g074600.4.1	No alias	component MED34 of MEDIATOR transcription co-activator complex	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	None	Extended
BP	GO:0006261	DNA-dependent DNA replication	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007154	cell communication	None	Extended
MF	GO:0008026	ATP-dependent helicase activity	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	None	Extended
BP	GO:0009414	response to water deprivation	None	Extended
BP	GO:0009415	response to water	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
BP	GO:0031668	cellular response to extracellular stimulus	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
BP	GO:0042631	cellular response to water deprivation	IEP	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
MF	GO:0070035	purine NTP-dependent helicase activity	None	Extended
BP	GO:0070417	cellular response to cold	IEP	Interproscan
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071229	cellular response to acid chemical	None	Extended
BP	GO:0071462	cellular response to water stimulus	None	Extended
BP	GO:0071496	cellular response to external stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1901701	cellular response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000280	nuclear division	IEP	Neighborhood
MF	GO:0000287	magnesium ion binding	IEP	Neighborhood
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	Neighborhood
BP	GO:0000725	recombinational repair	IEP	Neighborhood
CC	GO:0000808	origin recognition complex	IEP	Neighborhood
CC	GO:0000811	GINS complex	IEP	Neighborhood
BP	GO:0000911	cytokinesis by cell plate formation	IEP	Neighborhood
BP	GO:0002683	negative regulation of immune system process	IEP	Neighborhood
BP	GO:0002832	negative regulation of response to biotic stimulus	IEP	Neighborhood
BP	GO:0003006	developmental process involved in reproduction	IEP	Neighborhood
MF	GO:0004422	hypoxanthine phosphoribosyltransferase activity	IEP	Neighborhood
MF	GO:0004602	glutathione peroxidase activity	IEP	Neighborhood
MF	GO:0004725	protein tyrosine phosphatase activity	IEP	Neighborhood
MF	GO:0004871	obsolete signal transducer activity	IEP	Neighborhood
MF	GO:0005102	signaling receptor binding	IEP	Neighborhood
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	Neighborhood
BP	GO:0006166	purine ribonucleoside salvage	IEP	Neighborhood
BP	GO:0006168	adenine salvage	IEP	Neighborhood
BP	GO:0006177	GMP biosynthetic process	IEP	Neighborhood
BP	GO:0006178	guanine salvage	IEP	Neighborhood
BP	GO:0006188	IMP biosynthetic process	IEP	Neighborhood
BP	GO:0006268	DNA unwinding involved in DNA replication	IEP	Neighborhood
BP	GO:0006270	DNA replication initiation	IEP	Neighborhood
BP	GO:0006275	regulation of DNA replication	IEP	Neighborhood
BP	GO:0006302	double-strand break repair	IEP	Neighborhood
BP	GO:0006304	DNA modification	IEP	Neighborhood
BP	GO:0006305	DNA alkylation	IEP	Neighborhood
BP	GO:0006306	DNA methylation	IEP	Neighborhood
BP	GO:0006310	DNA recombination	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006333	chromatin assembly or disassembly	IEP	Neighborhood
BP	GO:0006338	chromatin remodeling	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0007059	chromosome segregation	IEP	Neighborhood
BP	GO:0007129	synapsis	IEP	Neighborhood
BP	GO:0007131	reciprocal meiotic recombination	IEP	Neighborhood
BP	GO:0007389	pattern specification process	IEP	Neighborhood
MF	GO:0008083	growth factor activity	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
BP	GO:0008283	cell proliferation	IEP	Neighborhood
BP	GO:0009113	purine nucleobase biosynthetic process	IEP	Neighborhood
BP	GO:0009163	nucleoside biosynthetic process	IEP	Neighborhood
MF	GO:0009672	auxin:proton symporter activity	IEP	Neighborhood
BP	GO:0009909	regulation of flower development	IEP	Neighborhood
BP	GO:0009958	positive gravitropism	IEP	Neighborhood
BP	GO:0010073	meristem maintenance	IEP	Neighborhood
BP	GO:0010075	regulation of meristem growth	IEP	Neighborhood
BP	GO:0010082	regulation of root meristem growth	IEP	Neighborhood
BP	GO:0010112	regulation of systemic acquired resistance	IEP	Neighborhood
BP	GO:0010113	negative regulation of systemic acquired resistance	IEP	Neighborhood
MF	GO:0010385	double-stranded methylated DNA binding	IEP	Neighborhood
BP	GO:0010389	regulation of G2/M transition of mitotic cell cycle	IEP	Neighborhood
BP	GO:0010444	guard mother cell differentiation	IEP	Neighborhood
BP	GO:0010452	histone H3-K36 methylation	IEP	Neighborhood
MF	GO:0010485	H4 histone acetyltransferase activity	IEP	Neighborhood
BP	GO:0010500	transmitting tissue development	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
MF	GO:0015171	amino acid transmembrane transporter activity	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0016311	dephosphorylation	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0018193	peptidyl-amino acid modification	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0022402	cell cycle process	IEP	Neighborhood
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
BP	GO:0030154	cell differentiation	IEP	Neighborhood
MF	GO:0030545	receptor regulator activity	IEP	Neighborhood
MF	GO:0030946	protein tyrosine phosphatase activity, metal-dependent	IEP	Neighborhood
CC	GO:0031261	DNA replication preinitiation complex	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0031497	chromatin assembly	IEP	Neighborhood
BP	GO:0031507	heterochromatin assembly	IEP	Neighborhood
BP	GO:0032102	negative regulation of response to external stimulus	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
BP	GO:0032261	purine nucleotide salvage	IEP	Neighborhood
BP	GO:0032263	GMP salvage	IEP	Neighborhood
BP	GO:0032264	IMP salvage	IEP	Neighborhood
BP	GO:0032392	DNA geometric change	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
BP	GO:0032506	cytokinetic process	IEP	Neighborhood
BP	GO:0032508	DNA duplex unwinding	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
BP	GO:0035825	homologous recombination	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0040008	regulation of growth	IEP	Neighborhood
BP	GO:0042138	meiotic DNA double-strand break formation	IEP	Neighborhood
BP	GO:0042278	purine nucleoside metabolic process	IEP	Neighborhood
BP	GO:0042451	purine nucleoside biosynthetic process	IEP	Neighborhood
BP	GO:0042455	ribonucleoside biosynthetic process	IEP	Neighborhood
BP	GO:0043096	purine nucleobase salvage	IEP	Neighborhood
BP	GO:0043101	purine-containing compound salvage	IEP	Neighborhood
BP	GO:0043173	nucleotide salvage	IEP	Neighborhood
BP	GO:0043174	nucleoside salvage	IEP	Neighborhood
MF	GO:0043295	glutathione binding	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
BP	GO:0043901	negative regulation of multi-organism process	IEP	Neighborhood
CC	GO:0044427	chromosomal part	IEP	Neighborhood
CC	GO:0044454	nuclear chromosome part	IEP	Neighborhood
BP	GO:0044728	DNA methylation or demethylation	IEP	Neighborhood
BP	GO:0045787	positive regulation of cell cycle	IEP	Neighborhood
BP	GO:0045824	negative regulation of innate immune response	IEP	Neighborhood
BP	GO:0046037	GMP metabolic process	IEP	Neighborhood
BP	GO:0046040	IMP metabolic process	IEP	Neighborhood
BP	GO:0046083	adenine metabolic process	IEP	Neighborhood
BP	GO:0046084	adenine biosynthetic process	IEP	Neighborhood
BP	GO:0046098	guanine metabolic process	IEP	Neighborhood
BP	GO:0046099	guanine biosynthetic process	IEP	Neighborhood
BP	GO:0046100	hypoxanthine metabolic process	IEP	Neighborhood
BP	GO:0046112	nucleobase biosynthetic process	IEP	Neighborhood
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Neighborhood
BP	GO:0046129	purine ribonucleoside biosynthetic process	IEP	Neighborhood
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	Neighborhood
MF	GO:0046976	histone methyltransferase activity (H3-K27 specific)	IEP	Neighborhood
MF	GO:0048018	receptor ligand activity	IEP	Neighborhood
BP	GO:0048285	organelle fission	IEP	Neighborhood
BP	GO:0048444	floral organ morphogenesis	IEP	Neighborhood
BP	GO:0048446	petal morphogenesis	IEP	Neighborhood
BP	GO:0048449	floral organ formation	IEP	Neighborhood
BP	GO:0048509	regulation of meristem development	IEP	Neighborhood
BP	GO:0048580	regulation of post-embryonic development	IEP	Neighborhood
BP	GO:0048638	regulation of developmental growth	IEP	Neighborhood
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	Neighborhood
BP	GO:0048829	root cap development	IEP	Neighborhood
BP	GO:0048831	regulation of shoot system development	IEP	Neighborhood
BP	GO:0050777	negative regulation of immune response	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050793	regulation of developmental process	IEP	Neighborhood
BP	GO:0051052	regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0051239	regulation of multicellular organismal process	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
BP	GO:0051567	histone H3-K9 methylation	IEP	Neighborhood
BP	GO:0051568	histone H3-K4 methylation	IEP	Neighborhood
BP	GO:0051726	regulation of cell cycle	IEP	Neighborhood
BP	GO:0061647	histone H3-K9 modification	IEP	Neighborhood
BP	GO:0061982	meiosis I cell cycle process	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	Neighborhood
BP	GO:0070734	histone H3-K27 methylation	IEP	Neighborhood
BP	GO:0070828	heterochromatin organization	IEP	Neighborhood
CC	GO:0071944	cell periphery	IEP	Neighborhood
MF	GO:0072341	modified amino acid binding	IEP	Neighborhood
BP	GO:0080156	mitochondrial mRNA modification	IEP	Neighborhood
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	Neighborhood
BP	GO:0090627	plant epidermal cell differentiation	IEP	Neighborhood
BP	GO:0090697	post-embryonic plant organ morphogenesis	IEP	Neighborhood
MF	GO:0106130	purine phosphoribosyltransferase activity	IEP	Neighborhood
MF	GO:1900750	oligopeptide binding	IEP	Neighborhood
BP	GO:1900864	mitochondrial RNA modification	IEP	Neighborhood
BP	GO:1901068	guanosine-containing compound metabolic process	IEP	Neighborhood
BP	GO:1901070	guanosine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:1901987	regulation of cell cycle phase transition	IEP	Neighborhood
BP	GO:1901990	regulation of mitotic cell cycle phase transition	IEP	Neighborhood
BP	GO:1902410	mitotic cytokinetic process	IEP	Neighborhood
BP	GO:1902749	regulation of cell cycle G2/M phase transition	IEP	Neighborhood
BP	GO:1903047	mitotic cell cycle process	IEP	Neighborhood
BP	GO:1905392	plant organ morphogenesis	IEP	Neighborhood
BP	GO:1905393	plant organ formation	IEP	Neighborhood
BP	GO:2000026	regulation of multicellular organismal development	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2000241	regulation of reproductive process	IEP	Neighborhood
BP	GO:2000280	regulation of root development	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	209	377
IPR032284	RecQ_Zn-bd	535	604
IPR001650	Helicase_C	414	522

External Links

No external refs found!

AT3G05740 (RECQI1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation