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Description : component U1C of U1 small nuclear ribonucleoprotein particle (snRNP)
Gene families : OG0006423 (Archaeplastida) Phylogenetic Tree(s): OG0006423_tree ,
OG_05_0006641 (LandPlants) Phylogenetic Tree(s): OG_05_0006641_tree ,
OG_06_0007654 (SeedPlants) Phylogenetic Tree(s): OG_06_0007654_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_41077 | |
| Cluster | HCCA: Cluster_267 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre09.g401300 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.06 | Archaeplastida | |
| GSVIVT01011011001 | No alias | RNA processing.RNA splicing.U2-type-intron-specific... | 0.03 | Archaeplastida | |
| Mp4g05150.1 | No alias | component U1C of U1 small nuclear ribonucleoprotein... | 0.03 | Archaeplastida | |
| Solyc06g008860.3.1 | No alias | component U1C of U1 small nuclear ribonucleoprotein... | 0.08 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0004559 | alpha-mannosidase activity | IEP | Neighborhood |
| MF | GO:0005515 | protein binding | IEP | Neighborhood |
| BP | GO:0005996 | monosaccharide metabolic process | IEP | Neighborhood |
| BP | GO:0006013 | mannose metabolic process | IEP | Neighborhood |
| BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
| BP | GO:0006354 | DNA-templated transcription, elongation | IEP | Neighborhood |
| BP | GO:0006368 | transcription elongation from RNA polymerase II promoter | IEP | Neighborhood |
| CC | GO:0008023 | transcription elongation factor complex | IEP | Neighborhood |
| MF | GO:0015923 | mannosidase activity | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016569 | covalent chromatin modification | IEP | Neighborhood |
| BP | GO:0016570 | histone modification | IEP | Neighborhood |
| CC | GO:0016593 | Cdc73/Paf1 complex | IEP | Neighborhood |
| BP | GO:0019318 | hexose metabolic process | IEP | Neighborhood |
| CC | GO:0044451 | nucleoplasm part | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013085 | U1-CZ_Znf_C2H2 | 1 | 38 |
| No external refs found! |