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  5. Zm00001e000415_P001

Zm00001e000415_P001


Description : SSU processome assembly factor (UTP12)


Gene families : OG0003961 (Archaeplastida) Phylogenetic Tree(s): OG0003961_tree ,
OG_05_0007655 (LandPlants) Phylogenetic Tree(s): OG_05_0007655_tree ,
OG_06_0009973 (SeedPlants) Phylogenetic Tree(s): OG_06_0009973_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e000415_P001
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
AT3G21540 No alias transducin family protein / WD-40 repeat family protein 0.21 Archaeplastida
Cpa|evm.model.tig00021721.26 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 Archaeplastida
Cre10.g438700 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 Archaeplastida
GSVIVT01033690001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.22 Archaeplastida
LOC_Os03g05720.1 No alias SSU processome assembly factor (UTP12) 0.23 Archaeplastida
MA_10436238g0010 No alias SSU processome assembly factor (UTP12) 0.07 Archaeplastida
MA_367302g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_6918360g0010 No alias SSU processome assembly factor (UTP12) 0.04 Archaeplastida
Mp2g05570.1 No alias SSU processome assembly factor (UTP12) 0.18 Archaeplastida
Pp3c24_9070V3.1 No alias transducin family protein / WD-40 repeat family protein 0.03 Archaeplastida
Smo99969 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
Solyc10g039190.2.1 No alias SSU processome assembly factor (UTP12) 0.18 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Neighborhood
MF GO:0004176 ATP-dependent peptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006188 IMP biosynthetic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016842 amidine-lyase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046040 IMP metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0061608 nuclear import signal receptor activity IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090730 Las1 complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1902555 endoribonuclease complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
CC GO:1905348 endonuclease complex IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007148 SSU_processome_Utp12 788 889
IPR001680 WD40_repeat 183 218
IPR001680 WD40_repeat 145 178
IPR001680 WD40_repeat 389 419
IPR001680 WD40_repeat 567 600
IPR001680 WD40_repeat 648 685
IPR001680 WD40_repeat 99 136
IPR001680 WD40_repeat 66 94
No external refs found!