Zm00001e000999_P001

Description : U-box domain-containing protein 20 OS=Arabidopsis thaliana (sp|q9c8d1|pub20_arath : 224.0)

Gene families : OG0000112 (Archaeplastida) Phylogenetic Tree(s): OG0000112_tree ,
OG_05_0000097 (LandPlants) Phylogenetic Tree(s): OG_05_0000097_tree ,
OG_06_0001043 (SeedPlants) Phylogenetic Tree(s): OG_06_0001043_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e000999_P001
Cluster	HCCA: Cluster_291

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00199950	evm_27.TU.AmTr_v1...	U-box domain-containing protein 31 OS=Arabidopsis thaliana	0.03	Archaeplastida
AMTR_s00030p00130440	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
AMTR_s00030p00159240	evm_27.TU.AmTr_v1...	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.03	Archaeplastida
AMTR_s00069p00038840	evm_27.TU.AmTr_v1...	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana	0.02	Archaeplastida
AMTR_s00138p00053700	evm_27.TU.AmTr_v1...	U-box domain-containing protein 21 OS=Arabidopsis thaliana	0.05	Archaeplastida
AT1G66160	CMPG1, ATCMPG1	CYS, MET, PRO, and GLY protein 1	0.02	Archaeplastida
AT3G02840	No alias	ARM repeat superfamily protein	0.06	Archaeplastida
AT3G52450	PUB22	plant U-box 22	0.05	Archaeplastida
AT5G37490	No alias	ARM repeat superfamily protein	0.03	Archaeplastida
AT5G64660	CMPG2, ATCMPG2	CYS, MET, PRO, and GLY protein 2	0.1	Archaeplastida
GSVIVT01011140001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01011616001	No alias	U-box domain-containing protein 20 OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01026542001	No alias	U-box domain-containing protein 27 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01031720001	No alias	U-box domain-containing protein 26 OS=Arabidopsis thaliana	0.02	Archaeplastida
Gb_02628	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.06	Archaeplastida
Gb_02629	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.03	Archaeplastida
Gb_02633	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.04	Archaeplastida
Gb_02635	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.05	Archaeplastida
Gb_16228	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
Gb_17119	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.03	Archaeplastida
Gb_19502	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.04	Archaeplastida
Gb_27794	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.02	Archaeplastida
Gb_29851	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os01g64570.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.12	Archaeplastida
LOC_Os02g33680.1	No alias	U-box domain-containing protein 29 OS=Arabidopsis...	0.07	Archaeplastida
LOC_Os02g34410.1	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	Archaeplastida
LOC_Os02g46500.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os02g50460.1	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os03g13740.1	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os04g34030.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
LOC_Os04g34140.1	No alias	E3 ubiquitin ligase (PUB)	0.05	Archaeplastida
LOC_Os04g49970.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida
LOC_Os04g58920.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os06g13870.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.07	Archaeplastida
LOC_Os08g04470.1	No alias	U-box domain-containing protein 8 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os10g03440.1	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.13	Archaeplastida
MA_10432813g0010	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.04	Archaeplastida
MA_10433846g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
MA_126399g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	Archaeplastida
MA_1663g0020	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.05	Archaeplastida
MA_17715g0010	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.04	Archaeplastida
MA_33190g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
MA_3784951g0010	No alias	no hits & (original description: none)	0.06	Archaeplastida
MA_415344g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
MA_52661g0010	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.04	Archaeplastida
MA_83739g0020	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.05	Archaeplastida
MA_84154g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.06	Archaeplastida
MA_8837995g0010	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.05	Archaeplastida
MA_95662g0020	No alias	U-box domain-containing protein 27 OS=Arabidopsis...	0.05	Archaeplastida
Mp2g06090.1	No alias	E3 ubiquitin ligase (PUB)	0.04	Archaeplastida
Mp3g11730.1	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Mp3g22740.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	Archaeplastida
Mp3g22750.1	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.03	Archaeplastida
Mp7g11000.1	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.06	Archaeplastida
Pp3c10_20630V3.1	No alias	plant U-box 22	0.05	Archaeplastida
Pp3c4_6500V3.1	No alias	plant U-box 22	0.04	Archaeplastida
Smo231257	No alias	U-box domain-containing protein 26 OS=Arabidopsis thaliana	0.02	Archaeplastida
Solyc01g007000.4.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	Archaeplastida
Solyc01g007010.2.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.06	Archaeplastida
Solyc01g007020.4.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida
Solyc01g007030.3.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
Solyc01g007040.4.1	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.06	Archaeplastida
Solyc01g007050.3.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.04	Archaeplastida
Solyc01g080920.3.1	No alias	No annotation	0.02	Archaeplastida
Solyc01g107980.3.1	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.08	Archaeplastida
Solyc04g008100.3.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.08	Archaeplastida
Solyc04g071030.1.1	No alias	E3 ubiquitin ligase (PUB)	0.07	Archaeplastida
Solyc04g077610.4.1	No alias	U-box domain-containing protein 30 OS=Arabidopsis...	0.03	Archaeplastida
Solyc06g074140.1.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.05	Archaeplastida
Solyc11g006030.1.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.05	Archaeplastida
Solyc11g068920.1.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
Solyc11g068940.1.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e007109_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.08	Archaeplastida
Zm00001e008167_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e014752_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e014779_P001	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e015491_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e015763_P001	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e022698_P001	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.05	Archaeplastida
Zm00001e040854_P001	No alias	U-box domain-containing protein 29 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e041397_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Neighborhood
MF	GO:0001871	pattern binding	IEP	Neighborhood
MF	GO:0005516	calmodulin binding	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	Neighborhood
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
BP	GO:0006633	fatty acid biosynthetic process	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009250	glucan biosynthetic process	IEP	Neighborhood
BP	GO:0009308	amine metabolic process	IEP	Neighborhood
BP	GO:0009309	amine biosynthetic process	IEP	Neighborhood
MF	GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	IEP	Neighborhood
MF	GO:0015020	glucuronosyltransferase activity	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
BP	GO:0016053	organic acid biosynthetic process	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016759	cellulose synthase activity	IEP	Neighborhood
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	Neighborhood
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0030243	cellulose metabolic process	IEP	Neighborhood
BP	GO:0030244	cellulose biosynthetic process	IEP	Neighborhood
MF	GO:0030247	polysaccharide binding	IEP	Neighborhood
MF	GO:0030410	nicotianamine synthase activity	IEP	Neighborhood
BP	GO:0030417	nicotianamine metabolic process	IEP	Neighborhood
BP	GO:0030418	nicotianamine biosynthetic process	IEP	Neighborhood
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0042401	cellular biogenic amine biosynthetic process	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0044106	cellular amine metabolic process	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0044281	small molecule metabolic process	IEP	Neighborhood
BP	GO:0044283	small molecule biosynthetic process	IEP	Neighborhood
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:0051273	beta-glucan metabolic process	IEP	Neighborhood
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Neighborhood
BP	GO:0072350	tricarboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0072351	tricarboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	30	101

External Links

No external refs found!

Zm00001e000999_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation