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  5. Zm00001e002719_P003

Zm00001e002719_P003


Description : Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis thaliana (sp|q0wlc6|pp349_arath : 796.0)


Gene families : OG0005481 (Archaeplastida) Phylogenetic Tree(s): OG0005481_tree ,
OG_05_0004519 (LandPlants) Phylogenetic Tree(s): OG_05_0004519_tree ,
OG_06_0004816 (SeedPlants) Phylogenetic Tree(s): OG_06_0004816_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e002719_P003
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00451p00003410 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein MRL1,... 0.03 Archaeplastida
AT4G34830 MRL1 Pentatricopeptide repeat (PPR) superfamily protein 0.1 Archaeplastida
GSVIVT01024119001 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.07 Archaeplastida
Gb_33501 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.02 Archaeplastida
LOC_Os10g10170.1 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.05 Archaeplastida
MA_10429571g0010 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.04 Archaeplastida
MA_122602g0010 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.05 Archaeplastida
Mp3g17160.1 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.08 Archaeplastida
Pp3c10_19570V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
Pp3c12_14320V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Pp3c7_22430V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
Smo115078 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.06 Archaeplastida
Smo169254 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.04 Archaeplastida
Solyc01g111020.3.1 No alias Pentatricopeptide repeat-containing protein MRL1,... 0.11 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0002161 aminoacyl-tRNA editing activity IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004813 alanine-tRNA ligase activity IEP Neighborhood
MF GO:0004832 valine-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006066 alcohol metabolic process IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006419 alanyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006438 valyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008374 O-acyltransferase activity IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0019751 polyol metabolic process IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0043647 inositol phosphate metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
BP GO:0046164 alcohol catabolic process IEP Neighborhood
BP GO:0046174 polyol catabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Neighborhood
BP GO:0046855 inositol phosphate dephosphorylation IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0071545 inositol phosphate catabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901616 organic hydroxy compound catabolic process IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 747 794
IPR002885 Pentatricopeptide_repeat 499 527
IPR002885 Pentatricopeptide_repeat 716 742
IPR002885 Pentatricopeptide_repeat 462 492
IPR033443 PPR_long 538 706
No external refs found!