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  5. Zm00001e003453_P002

Zm00001e003453_P002


Description : no hits & (original description: none)


Gene families : OG0004343 (Archaeplastida) Phylogenetic Tree(s): OG0004343_tree ,
OG_05_0003959 (LandPlants) Phylogenetic Tree(s): OG_05_0003959_tree ,
OG_06_0007728 (SeedPlants) Phylogenetic Tree(s): OG_06_0007728_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e003453_P002
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
AT2G44200 No alias CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA... 0.11 Archaeplastida
Cre01.g021400 No alias No description available 0.02 Archaeplastida
GSVIVT01018754001 No alias No description available 0.11 Archaeplastida
LOC_Os08g39090.1 No alias no hits & (original description: none) 0.14 Archaeplastida
Mp6g00340.1 No alias no hits & (original description: none) 0.1 Archaeplastida
Pp3c3_9980V3.1 No alias CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA... 0.06 Archaeplastida
Smo232333 No alias No description available 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR022209 CWC25 65 156
IPR019339 CIR_N_dom 11 46
No external refs found!