Coexpression cluster: Cluster_103 (HCCA)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 16.11% (29/180) 1.88 0.0 0.0
GO:0031047 gene silencing by RNA 2.22% (4/180) 6.39 0.0 1.2e-05
GO:0016458 gene silencing 2.22% (4/180) 6.39 0.0 1.2e-05
GO:0005634 nucleus 5.56% (10/180) 3.15 0.0 2e-05
GO:0043231 intracellular membrane-bounded organelle 5.56% (10/180) 2.96 1e-06 4.3e-05
GO:0043227 membrane-bounded organelle 5.56% (10/180) 2.96 1e-06 4.3e-05
GO:0043229 intracellular organelle 7.22% (13/180) 2.26 4e-06 0.000159
GO:0043226 organelle 7.22% (13/180) 2.26 4e-06 0.000159
GO:0010629 negative regulation of gene expression 2.22% (4/180) 5.04 6e-06 0.000236
GO:0009892 negative regulation of metabolic process 2.22% (4/180) 4.94 9e-06 0.000257
GO:0010605 negative regulation of macromolecule metabolic process 2.22% (4/180) 4.94 9e-06 0.000257
GO:0034641 cellular nitrogen compound metabolic process 8.89% (16/180) 1.82 1.5e-05 0.0004
GO:0006725 cellular aromatic compound metabolic process 7.22% (13/180) 2.05 1.9e-05 0.000445
GO:0046483 heterocycle metabolic process 7.22% (13/180) 2.06 1.8e-05 0.000453
GO:0006139 nucleobase-containing compound metabolic process 6.67% (12/180) 2.13 2.3e-05 0.000473
GO:0071840 cellular component organization or biogenesis 4.44% (8/180) 2.81 2.2e-05 0.000478
GO:1901360 organic cyclic compound metabolic process 7.22% (13/180) 2.01 2.5e-05 0.000493
GO:0006396 RNA processing 3.33% (6/180) 3.26 4.3e-05 0.000708
GO:0048519 negative regulation of biological process 2.22% (4/180) 4.39 4e-05 0.000741
GO:0044424 intracellular part 9.44% (17/180) 1.63 4.3e-05 0.000745
GO:0090304 nucleic acid metabolic process 5.56% (10/180) 2.28 4.8e-05 0.000763
GO:0044464 cell part 9.44% (17/180) 1.57 7e-05 0.001059
GO:0016043 cellular component organization 3.89% (7/180) 2.79 7.7e-05 0.001067
GO:0005488 binding 27.78% (50/180) 0.76 7.6e-05 0.00109
GO:0042054 histone methyltransferase activity 1.67% (3/180) 5.04 0.0001 0.001185
GO:0016278 lysine N-methyltransferase activity 1.67% (3/180) 5.04 0.0001 0.001185
GO:0016279 protein-lysine N-methyltransferase activity 1.67% (3/180) 5.04 0.0001 0.001185
GO:0018024 histone-lysine N-methyltransferase activity 1.67% (3/180) 5.04 0.0001 0.001185
GO:0008276 protein methyltransferase activity 1.67% (3/180) 4.98 0.000116 0.00132
GO:0006325 chromatin organization 2.22% (4/180) 3.99 0.00012 0.001325
GO:0008170 N-methyltransferase activity 1.67% (3/180) 4.85 0.000151 0.001613
GO:0016070 RNA metabolic process 4.44% (8/180) 2.39 0.000161 0.001668
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 1.67% (3/180) 4.44 0.000361 0.003513
GO:0032259 methylation 1.67% (3/180) 4.44 0.000361 0.003513
GO:0016879 ligase activity, forming carbon-nitrogen bonds 1.67% (3/180) 4.31 0.000472 0.004461
GO:0006221 pyrimidine nucleotide biosynthetic process 1.11% (2/180) 5.68 0.000658 0.00573
GO:0006220 pyrimidine nucleotide metabolic process 1.11% (2/180) 5.68 0.000658 0.00573
GO:0003883 CTP synthase activity 1.11% (2/180) 5.68 0.000658 0.00573
GO:0009987 cellular process 16.11% (29/180) 0.86 0.001256 0.010656
GO:0016874 ligase activity 2.22% (4/180) 3.01 0.001616 0.013374
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 1.67% (3/180) 3.55 0.002171 0.014666
GO:0016859 cis-trans isomerase activity 1.67% (3/180) 3.55 0.002171 0.014666
GO:0034968 histone lysine methylation 1.11% (2/180) 4.85 0.002149 0.015136
GO:0016571 histone methylation 1.11% (2/180) 4.85 0.002149 0.015136
GO:0072527 pyrimidine-containing compound metabolic process 1.11% (2/180) 4.85 0.002149 0.015136
GO:0018022 peptidyl-lysine methylation 1.11% (2/180) 4.85 0.002149 0.015136
GO:0072528 pyrimidine-containing compound biosynthetic process 1.11% (2/180) 4.94 0.001886 0.015226
GO:0097159 organic cyclic compound binding 17.22% (31/180) 0.78 0.002036 0.015675
GO:1901363 heterocyclic compound binding 17.22% (31/180) 0.78 0.002036 0.015675
GO:0008168 methyltransferase activity 2.78% (5/180) 2.45 0.00238 0.015759
GO:0008213 protein alkylation 1.11% (2/180) 4.68 0.002725 0.016702
GO:0042393 histone binding 1.11% (2/180) 4.68 0.002725 0.016702
GO:0006479 protein methylation 1.11% (2/180) 4.68 0.002725 0.016702
GO:0018193 peptidyl-amino acid modification 1.67% (3/180) 3.46 0.002619 0.016997
GO:0016741 transferase activity, transferring one-carbon groups 2.78% (5/180) 2.36 0.003073 0.018497
GO:0010468 regulation of gene expression 6.11% (11/180) 1.38 0.003603 0.021294
GO:0043414 macromolecule methylation 1.11% (2/180) 4.33 0.004442 0.022974
GO:0018205 peptidyl-lysine modification 1.11% (2/180) 4.33 0.004442 0.022974
GO:0044452 nucleolar part 0.56% (1/180) 7.85 0.004329 0.023113
GO:0034457 Mpp10 complex 0.56% (1/180) 7.85 0.004329 0.023113
GO:0005732 small nucleolar ribonucleoprotein complex 0.56% (1/180) 7.85 0.004329 0.023113
GO:0005667 transcription factor complex 1.11% (2/180) 4.39 0.004067 0.023619
GO:0005515 protein binding 10.0% (18/180) 0.98 0.004677 0.023815
GO:0019222 regulation of metabolic process 6.11% (11/180) 1.35 0.004254 0.023864
GO:0060255 regulation of macromolecule metabolic process 6.11% (11/180) 1.36 0.004191 0.023917
GO:0016853 isomerase activity 2.22% (4/180) 2.56 0.00495 0.024827
GO:0006364 rRNA processing 1.11% (2/180) 4.21 0.005238 0.025494
GO:0016072 rRNA metabolic process 1.11% (2/180) 4.21 0.005238 0.025494
GO:0003674 molecular_function 37.22% (67/180) 0.4 0.005829 0.027963
GO:0016570 histone modification 1.11% (2/180) 4.04 0.006543 0.030505
GO:0016569 covalent chromatin modification 1.11% (2/180) 4.04 0.006543 0.030505
GO:0032784 regulation of DNA-templated transcription, elongation 0.56% (1/180) 6.85 0.00864 0.035307
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 0.56% (1/180) 6.85 0.00864 0.035307
GO:0034243 regulation of transcription elongation from RNA polymerase II promoter 0.56% (1/180) 6.85 0.00864 0.035307
GO:0045944 positive regulation of transcription by RNA polymerase II 0.56% (1/180) 6.85 0.00864 0.035307
GO:0006425 glutaminyl-tRNA aminoacylation 0.56% (1/180) 6.85 0.00864 0.035307
GO:0000725 recombinational repair 0.56% (1/180) 6.85 0.00864 0.035307
GO:0043044 ATP-dependent chromatin remodeling 0.56% (1/180) 6.85 0.00864 0.035307
GO:0031491 nucleosome binding 0.56% (1/180) 6.85 0.00864 0.035307
GO:0032786 positive regulation of DNA-templated transcription, elongation 0.56% (1/180) 6.85 0.00864 0.035307
GO:0004819 glutamine-tRNA ligase activity 0.56% (1/180) 6.85 0.00864 0.035307
GO:0006397 mRNA processing 1.11% (2/180) 3.53 0.013052 0.049657
GO:0006338 chromatin remodeling 0.56% (1/180) 6.27 0.012932 0.049775
GO:0046654 tetrahydrofolate biosynthetic process 0.56% (1/180) 6.27 0.012932 0.049775
GO:0046653 tetrahydrofolate metabolic process 0.56% (1/180) 6.27 0.012932 0.049775
GO:0004146 dihydrofolate reductase activity 0.56% (1/180) 6.27 0.012932 0.049775
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_11 0.05 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_23 0.042 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_31 0.032 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_39 0.034 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_80 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_99 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_145 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_160 0.036 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_166 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_183 0.039 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_221 0.067 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_233 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_252 0.033 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_258 0.034 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_27 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_129 0.031 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_132 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_133 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_144 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_172 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_190 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_196 0.025 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_205 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_228 0.025 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_231 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_234 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_247 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_253 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_40 0.031 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_55 0.026 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_71 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_131 0.022 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_144 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_4 0.027 Archaeplastida Compare
Gingko biloba HCCA Cluster_116 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_131 0.031 Archaeplastida Compare
Gingko biloba HCCA Cluster_152 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_175 0.041 Archaeplastida Compare
Gingko biloba HCCA Cluster_267 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_289 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_6 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_110 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_225 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_322 0.028 Archaeplastida Compare
Zea mays HCCA Cluster_328 0.027 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_16 0.037 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_22 0.022 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_61 0.058 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_68 0.024 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_85 0.029 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_110 0.03 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_121 0.019 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_128 0.026 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_132 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_148 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_159 0.026 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_160 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_8 0.03 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_11 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_87 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_95 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_114 0.031 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_146 0.03 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_158 0.035 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_167 0.067 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_241 0.032 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_244 0.034 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_259 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_300 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_84 0.028 Archaeplastida Compare
Picea abies HCCA Cluster_182 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_203 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_277 0.041 Archaeplastida Compare
Picea abies HCCA Cluster_360 0.03 Archaeplastida Compare
Picea abies HCCA Cluster_393 0.036 Archaeplastida Compare
Picea abies HCCA Cluster_400 0.03 Archaeplastida Compare
Picea abies HCCA Cluster_403 0.032 Archaeplastida Compare
Picea abies HCCA Cluster_412 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_420 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_478 0.032 Archaeplastida Compare
Picea abies HCCA Cluster_492 0.049 Archaeplastida Compare
Picea abies HCCA Cluster_520 0.024 Archaeplastida Compare
Picea abies HCCA Cluster_522 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_526 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_530 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_49 0.097 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_96 0.045 Archaeplastida Compare
Oryza sativa HCCA Cluster_174 0.086 Archaeplastida Compare
Oryza sativa HCCA Cluster_176 0.024 Archaeplastida Compare
Oryza sativa HCCA Cluster_242 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_273 0.083 Archaeplastida Compare
Oryza sativa HCCA Cluster_293 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_297 0.03 Archaeplastida Compare
Oryza sativa HCCA Cluster_316 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_348 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_350 0.021 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_75 0.036 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_82 0.099 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_172 0.035 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_175 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_201 0.028 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_8 0.085 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_35 0.035 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_118 0.026 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_131 0.061 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_157 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_202 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_209 0.072 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_218 0.048 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_236 0.029 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_247 0.039 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_256 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_260 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.041 Archaeplastida Compare
Vitis vinifera HCCA Cluster_60 0.028 Archaeplastida Compare
Vitis vinifera HCCA Cluster_121 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_123 0.033 Archaeplastida Compare
Vitis vinifera HCCA Cluster_164 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_172 0.036 Archaeplastida Compare
Vitis vinifera HCCA Cluster_180 0.026 Archaeplastida Compare
Vitis vinifera HCCA Cluster_181 0.031 Archaeplastida Compare
Vitis vinifera HCCA Cluster_197 0.025 Archaeplastida Compare
Vitis vinifera HCCA Cluster_220 0.036 Archaeplastida Compare
Vitis vinifera HCCA Cluster_221 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_233 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_238 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_247 0.026 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_22 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_56 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_60 0.086 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_87 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_121 0.032 Archaeplastida Compare
Sequences (180) (download table)

InterPro Domains

GO Terms

Family Terms