AT3G10090

Description : Nucleic acid-binding, OB-fold-like protein

Gene families : OG0003817 (Archaeplastida) Phylogenetic Tree(s): OG0003817_tree ,
OG_05_0003626 (LandPlants) Phylogenetic Tree(s): OG_05_0003626_tree ,
OG_06_0004396 (SeedPlants) Phylogenetic Tree(s): OG_06_0004396_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G10090
Cluster	HCCA: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
Cre12.g510450	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	Archaeplastida
LOC_Os10g27174.1	No alias	component RPS28 of SSU proteome	0.14	Archaeplastida
MA_10206328g0010	No alias	component RPS28 of SSU proteome	0.02	Archaeplastida
Mp3g15160.1	No alias	component RPS28 of SSU proteome	0.24	Archaeplastida
Pp3c14_19610V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.06	Archaeplastida
Pp3c17_13300V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.09	Archaeplastida
Pp3c5_6000V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.08	Archaeplastida
Smo170205	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	Archaeplastida
Solyc02g021400.2.1	No alias	component RPS28 of SSU proteome	0.13	Archaeplastida
Solyc10g078630.2.1	No alias	component RPS28 of SSU proteome	0.1	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0003735	structural constituent of ribosome	IBA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006405	RNA export from nucleus	None	Extended
BP	GO:0006407	rRNA export from nucleus	IBA	Interproscan
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042254	ribosome biogenesis	ISS	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044445	cytosolic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0050657	nucleic acid transport	None	Extended
BP	GO:0050658	RNA transport	None	Extended
BP	GO:0051029	rRNA transport	None	Extended
BP	GO:0051168	nuclear export	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051236	establishment of RNA localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0097064	ncRNA export from nucleus	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0000741	karyogamy	IEP	Neighborhood
BP	GO:0001510	RNA methylation	IEP	Neighborhood
MF	GO:0004129	cytochrome-c oxidase activity	IEP	Neighborhood
CC	GO:0005680	anaphase-promoting complex	IEP	Neighborhood
CC	GO:0005730	nucleolus	IEP	Neighborhood
CC	GO:0005739	mitochondrion	IEP	Neighborhood
CC	GO:0005740	mitochondrial envelope	IEP	Neighborhood
CC	GO:0005750	mitochondrial respiratory chain complex III	IEP	Neighborhood
CC	GO:0005753	mitochondrial proton-transporting ATP synthase complex	IEP	Neighborhood
BP	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
MF	GO:0008121	ubiquinol-cytochrome-c reductase activity	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0009055	electron transfer activity	IEP	Neighborhood
BP	GO:0009060	aerobic respiration	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
BP	GO:0009853	photorespiration	IEP	Neighborhood
BP	GO:0010193	response to ozone	IEP	Neighborhood
BP	GO:0010197	polar nucleus fusion	IEP	Neighborhood
BP	GO:0010229	inflorescence development	IEP	Neighborhood
MF	GO:0015002	heme-copper terminal oxidase activity	IEP	Neighborhood
CC	GO:0015030	Cajal body	IEP	Neighborhood
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015078	proton transmembrane transporter activity	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
CC	GO:0016469	proton-transporting two-sector ATPase complex	IEP	Neighborhood
CC	GO:0016604	nuclear body	IEP	Neighborhood
MF	GO:0016675	oxidoreductase activity, acting on a heme group of donors	IEP	Neighborhood
MF	GO:0016676	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Neighborhood
MF	GO:0016681	oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	IEP	Neighborhood
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	Neighborhood
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0022904	respiratory electron transport chain	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
BP	GO:0043094	cellular metabolic compound salvage	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044455	mitochondrial membrane part	IEP	Neighborhood
CC	GO:0045259	proton-transporting ATP synthase complex	IEP	Neighborhood
CC	GO:0045275	respiratory chain complex III	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0048284	organelle fusion	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
CC	GO:0070069	cytochrome complex	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
CC	GO:0098798	mitochondrial protein complex	IEP	Neighborhood
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Neighborhood
CC	GO:0098803	respiratory chain complex	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1990204	oxidoreductase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000289	Ribosomal_S28e	4	63

External Links

No external refs found!

AT3G10090

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation