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  5. Zm00001e003593_P002

Zm00001e003593_P002


Description : mRNA-binding regulatory factor (UBP1)


Gene families : OG0002141 (Archaeplastida) Phylogenetic Tree(s): OG0002141_tree ,
OG_05_0002492 (LandPlants) Phylogenetic Tree(s): OG_05_0002492_tree ,
OG_06_0002145 (SeedPlants) Phylogenetic Tree(s): OG_06_0002145_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e003593_P002
Cluster HCCA: Cluster_322

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00204100 evm_27.TU.AmTr_v1... Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia 0.02 Archaeplastida
GSVIVT01015040001 No alias Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia 0.03 Archaeplastida
GSVIVT01016720001 No alias Oligouridylate-binding protein 1B OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01026404001 No alias Oligouridylate-binding protein 1B OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01035575001 No alias Oligouridylate-binding protein 1B OS=Arabidopsis thaliana 0.04 Archaeplastida
MA_10429328g0010 No alias mRNA-binding regulatory factor (UBP1) 0.04 Archaeplastida
Zm00001e021159_P001 No alias mRNA-binding regulatory factor (UBP1) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Neighborhood
BP GO:0000098 sulfur amino acid catabolic process IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003714 transcription corepressor activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
BP GO:0009063 cellular amino acid catabolic process IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Neighborhood
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Neighborhood
BP GO:0015689 molybdate ion transport IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
BP GO:0016054 organic acid catabolic process IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
BP GO:0030328 prenylcysteine catabolic process IEP Neighborhood
BP GO:0030329 prenylcysteine metabolic process IEP Neighborhood
BP GO:0042219 cellular modified amino acid catabolic process IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0044273 sulfur compound catabolic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
BP GO:0046395 carboxylic acid catabolic process IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 73 139
IPR000504 RRM_dom 158 228
IPR000504 RRM_dom 282 348
No external refs found!