Zm00001e003642_P002

Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana (sp|q38953|deah5_arath : 1376.0)

Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree ,
OG_05_0004210 (LandPlants) Phylogenetic Tree(s): OG_05_0004210_tree ,
OG_06_0004353 (SeedPlants) Phylogenetic Tree(s): OG_06_0004353_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e003642_P002
Cluster	HCCA: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
AT5G14900	No alias	helicase associated (HA2) domain-containing protein	0.02	Archaeplastida
Cpa\|evm.model.tig00021589.29	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	Archaeplastida
LOC_Os05g32370.1	No alias	RNA helicase (Prp2)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
BP	GO:0010035	response to inorganic substance	IEP	Neighborhood
BP	GO:0010038	response to metal ion	IEP	Neighborhood
MF	GO:0016755	transferase activity, transferring amino-acyl groups	IEP	Neighborhood
MF	GO:0016756	glutathione gamma-glutamylcysteinyltransferase activity	IEP	Neighborhood
BP	GO:0019748	secondary metabolic process	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	Neighborhood
BP	GO:0046937	phytochelatin metabolic process	IEP	Neighborhood
BP	GO:0046938	phytochelatin biosynthetic process	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003029	S1_domain	205	269
IPR011709	DUF1605	1047	1121
IPR007502	Helicase-assoc_dom	900	988
IPR001650	Helicase_C	707	838
IPR011545	DEAD/DEAH_box_helicase_dom	514	664

External Links

No external refs found!