1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT3G10360

AT3G10360 (APUM4, PUM4)


Aliases : APUM4, PUM4

Description : pumilio 4


Gene families : OG0000536 (Archaeplastida) Phylogenetic Tree(s): OG0000536_tree ,
OG_05_0000342 (LandPlants) Phylogenetic Tree(s): OG_05_0000342_tree ,
OG_06_0000990 (SeedPlants) Phylogenetic Tree(s): OG_06_0000990_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G10360
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Cre17.g746647 No alias Pumilio homolog 3 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01016236001 No alias Pumilio homolog 4 OS=Arabidopsis thaliana 0.03 Archaeplastida
Zm00001e016242_P002 No alias Pumilio homolog 4 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
MF GO:0003729 mRNA binding IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000045 autophagosome assembly IEP Neighborhood
CC GO:0000407 phagophore assembly site IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004707 MAP kinase activity IEP Neighborhood
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
BP GO:0007009 plasma membrane organization IEP Neighborhood
BP GO:0007033 vacuole organization IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0009846 pollen germination IEP Neighborhood
BP GO:0015804 neutral amino acid transport IEP Neighborhood
BP GO:0015824 proline transport IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
BP GO:0019321 pentose metabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0042732 D-xylose metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1905037 autophagosome organization IEP Neighborhood
InterPro domains Description Start Stop
IPR012940 NABP 313 663
IPR001313 Pumilio_RNA-bd_rpt 773 806
IPR001313 Pumilio_RNA-bd_rpt 882 912
IPR001313 Pumilio_RNA-bd_rpt 664 698
IPR001313 Pumilio_RNA-bd_rpt 738 766
IPR001313 Pumilio_RNA-bd_rpt 704 732
IPR001313 Pumilio_RNA-bd_rpt 931 949
IPR001313 Pumilio_RNA-bd_rpt 848 878
IPR001313 Pumilio_RNA-bd_rpt 809 842
No external refs found!