AT3G10610


Description : Ribosomal S17 family protein


Gene families : OG0002265 (Archaeplastida) Phylogenetic Tree(s): OG0002265_tree ,
OG_05_0002018 (LandPlants) Phylogenetic Tree(s): OG_05_0002018_tree ,
OG_06_0002044 (SeedPlants) Phylogenetic Tree(s): OG_06_0002044_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G10610
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00243530 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.26 Archaeplastida
AT2G04390 No alias Ribosomal S17 family protein 0.09 Archaeplastida
Cre12.g498250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.29 Archaeplastida
GSVIVT01033920001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
GSVIVT01034653001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 Archaeplastida
LOC_Os03g01900.1 No alias component RPS17 of SSU proteome 0.11 Archaeplastida
LOC_Os10g27190.1 No alias component RPS17 of SSU proteome 0.11 Archaeplastida
MA_184894g0010 No alias component RPS17 of SSU proteome 0.37 Archaeplastida
MA_217540g0010 No alias component RPS17 of SSU proteome 0.04 Archaeplastida
Mp8g18950.1 No alias component RPS17 of SSU proteome 0.4 Archaeplastida
Pp3c11_2530V3.1 No alias Ribosomal S17 family protein 0.3 Archaeplastida
Pp3c11_2540V3.1 No alias Ribosomal S17 family protein 0.29 Archaeplastida
Pp3c2_34780V3.1 No alias Ribosomal S17 family protein 0.22 Archaeplastida
Pp3c7_21070V3.1 No alias Ribosomal S17 family protein 0.07 Archaeplastida
Pp3c7_21140V3.1 No alias Ribosomal S17 family protein 0.36 Archaeplastida
Smo270936 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 Archaeplastida
Solyc05g055230.2.1 No alias component RPS17 of SSU proteome 0.37 Archaeplastida
Solyc10g150146.1.1 No alias component RPS17 of SSU proteome 0.37 Archaeplastida
Solyc11g006690.1.1 No alias component RPS17 of SSU proteome 0.22 Archaeplastida
Zm00001e030769_P001 No alias component RPS17 of SSU proteome 0.13 Archaeplastida
Zm00001e036233_P001 No alias component RPS17 of SSU proteome 0.14 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IBA Interproscan
BP GO:0001510 RNA methylation RCA Interproscan
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006164 purine nucleotide biosynthetic process RCA Interproscan
BP GO:0006412 translation ISS Interproscan
BP GO:0006414 translational elongation IBA Interproscan
BP GO:0009165 nucleotide biosynthetic process RCA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
CC GO:0022627 cytosolic small ribosomal subunit IDA Interproscan
Type GO Term Name Evidence Source
MF GO:0000036 acyl carrier activity IEP Neighborhood
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004526 ribonuclease P activity IEP Neighborhood
MF GO:0004549 tRNA-specific ribonuclease activity IEP Neighborhood
MF GO:0004550 nucleoside diphosphate kinase activity IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Neighborhood
CC GO:0005743 mitochondrial inner membrane IEP Neighborhood
CC GO:0005758 mitochondrial intermembrane space IEP Neighborhood
CC GO:0005763 mitochondrial small ribosomal subunit IEP Neighborhood
CC GO:0005773 vacuole IEP Neighborhood
CC GO:0005774 vacuolar membrane IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006626 protein targeting to mitochondrion IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008320 protein transmembrane transporter activity IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009259 ribonucleotide metabolic process IEP Neighborhood
BP GO:0009260 ribonucleotide biosynthetic process IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0009664 plant-type cell wall organization IEP Neighborhood
BP GO:0009735 response to cytokinin IEP Neighborhood
BP GO:0009909 regulation of flower development IEP Neighborhood
BP GO:0009955 adaxial/abaxial pattern specification IEP Neighborhood
BP GO:0009965 leaf morphogenesis IEP Neighborhood
BP GO:0010015 root morphogenesis IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
MF GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016018 cyclosporin A binding IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0019693 ribose phosphate metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019866 organelle inner membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0022625 cytosolic large ribosomal subunit IEP Neighborhood
MF GO:0022884 macromolecule transmembrane transporter activity IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030686 90S preribosome IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031970 organelle envelope lumen IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032870 cellular response to hormone stimulus IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034644 cellular response to UV IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042274 ribosomal small subunit biogenesis IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
MF GO:0042887 amide transmembrane transporter activity IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
MF GO:0044620 ACP phosphopantetheine attachment site binding IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0046390 ribose phosphate biosynthetic process IEP Neighborhood
BP GO:0048364 root development IEP Neighborhood
BP GO:0048367 shoot system development IEP Neighborhood
BP GO:0048569 post-embryonic animal organ development IEP Neighborhood
BP GO:0048731 system development IEP Neighborhood
MF GO:0051192 prosthetic group binding IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0071215 cellular response to abscisic acid stimulus IEP Neighborhood
BP GO:0071310 cellular response to organic substance IEP Neighborhood
BP GO:0071396 cellular response to lipid IEP Neighborhood
BP GO:0071433 cell wall repair IEP Neighborhood
BP GO:0071493 cellular response to UV-B IEP Neighborhood
BP GO:0071495 cellular response to endogenous stimulus IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
BP GO:0097306 cellular response to alcohol IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098799 outer mitochondrial membrane protein complex IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Neighborhood
MF GO:1904680 peptide transmembrane transporter activity IEP Neighborhood
BP GO:1905392 plant organ morphogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR001210 Ribosomal_S17e 1 120
No external refs found!