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  5. Zm00001e004642_P001

Zm00001e004642_P001


Description : PAP1/TAC3 cofactor of plastid-encoded RNA polymerase


Gene families : OG0004175 (Archaeplastida) Phylogenetic Tree(s): OG0004175_tree ,
OG_05_0006431 (LandPlants) Phylogenetic Tree(s): OG_05_0006431_tree ,
OG_06_0007755 (SeedPlants) Phylogenetic Tree(s): OG_06_0007755_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e004642_P001
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
AT3G04260 PTAC3 plastid transcriptionally active 3 0.14 Archaeplastida
GSVIVT01026351001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.06 Archaeplastida
Gb_05601 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.07 Archaeplastida
Gb_27856 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
LOC_Os10g32540.1 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.1 Archaeplastida
MA_10433475g0010 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.05 Archaeplastida
MA_7597000g0010 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.06 Archaeplastida
MA_86107g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp2g04680.1 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.04 Archaeplastida
Pp3c1_8170V3.1 No alias plastid transcriptionally active 3 0.08 Archaeplastida
Solyc04g050540.4.1 No alias PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.11 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR003034 SAP_dom 536 568
No external refs found!