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  5. Zm00001e004907_P001

Zm00001e004907_P001


Description : subunit 6 of RNA polymerase


Gene families : OG0003864 (Archaeplastida) Phylogenetic Tree(s): OG0003864_tree ,
OG_05_0004151 (LandPlants) Phylogenetic Tree(s): OG_05_0004151_tree ,
OG_06_0062741 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e004907_P001
Cluster HCCA: Cluster_328

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00112860 evm_27.TU.AmTr_v1... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.05 Archaeplastida
AT5G51940 NRPE6A, NRPD6A, NRPB6A RNA polymerase Rpb6 0.04 Archaeplastida
Cre01.g002200 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
LOC_Os03g38960.2 No alias subunit 6 of RNA polymerase 0.03 Archaeplastida
LOC_Os07g27930.1 No alias subunit 6 of RNA polymerase 0.03 Archaeplastida
MA_131181g0010 No alias DNA-directed RNA polymerases II, IV and V subunit 6A... 0.07 Archaeplastida
Mp1g19280.1 No alias subunit 6 of RNA polymerase 0.02 Archaeplastida
Solyc09g010500.3.1 No alias subunit 6 of RNA polymerase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006110 Pol_omega/K/RPB6 59 110
No external refs found!