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  5. Zm00001e005067_P001

Zm00001e005067_P001


Description : Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana (sp|q9sjg6|pp200_arath : 380.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0010583 (LandPlants) Phylogenetic Tree(s): OG_05_0010583_tree ,
OG_06_0010260 (SeedPlants) Phylogenetic Tree(s): OG_06_0010260_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e005067_P001
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00076010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
AMTR_s00006p00257020 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.03 Archaeplastida
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00014p00068600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g43980,... 0.03 Archaeplastida
AMTR_s00022p00127120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
AMTR_s00111p00107400 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.02 Archaeplastida
AMTR_s00170p00032020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16860... 0.02 Archaeplastida
AT2G02980 OTP85 Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
GSVIVT01000178001 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
GSVIVT01008965001 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.02 Archaeplastida
GSVIVT01009227001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
GSVIVT01011333001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
GSVIVT01020091001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01031251001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.04 Archaeplastida
GSVIVT01032721001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.02 Archaeplastida
Gb_06185 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Gb_11688 No alias OTP70 plastidial RNA splicing factor 0.02 Archaeplastida
Gb_14867 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_17294 No alias RNA editing factor (MEF3) 0.02 Archaeplastida
Gb_17379 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
Gb_21567 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
Gb_23678 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Gb_36538 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
LOC_Os02g46980.1 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.03 Archaeplastida
LOC_Os03g58100.1 No alias RNA editing factor (OTP85) 0.02 Archaeplastida
LOC_Os04g02850.1 No alias RNA editing factor (OTP84) 0.05 Archaeplastida
Pp3c22_1710V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Smo105356 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 Archaeplastida
Smo134559 No alias Pentatricopeptide repeat-containing protein At1g05750,... 0.02 Archaeplastida
Smo447287 No alias No description available 0.02 Archaeplastida
Smo95815 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.02 Archaeplastida
Solyc01g081020.1.1 No alias RNA editing factor (OTP80) 0.02 Archaeplastida
Solyc02g081900.4.1 No alias RNA editing factor (OTP84) 0.05 Archaeplastida
Solyc03g115800.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc11g017370.3.1 No alias RNA editing factor (AEF1) 0.02 Archaeplastida
Zm00001e011467_P004 No alias Pentatricopeptide repeat-containing protein At5g03800... 0.03 Archaeplastida
Zm00001e015517_P002 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e023289_P001 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006006 glucose metabolic process IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 198 227
IPR002885 Pentatricopeptide_repeat 338 381
IPR002885 Pentatricopeptide_repeat 306 332
IPR002885 Pentatricopeptide_repeat 234 262
IPR002885 Pentatricopeptide_repeat 409 433
IPR002885 Pentatricopeptide_repeat 101 128
IPR002885 Pentatricopeptide_repeat 174 196
No external refs found!