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  5. AT3G11500

AT3G11500


Description : Small nuclear ribonucleoprotein family protein


Gene families : OG0001659 (Archaeplastida) Phylogenetic Tree(s): OG0001659_tree ,
OG_05_0004881 (LandPlants) Phylogenetic Tree(s): OG_05_0004881_tree ,
OG_06_0006017 (SeedPlants) Phylogenetic Tree(s): OG_06_0006017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G11500
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00092540 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.06 Archaeplastida
Cpa|evm.model.tig00020531.48 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 Archaeplastida
Cpa|evm.model.tig00020553.48 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 Archaeplastida
Cre03.g164101 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.08 Archaeplastida
Cre13.g566050 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.09 Archaeplastida
Gb_00157 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.05 Archaeplastida
LOC_Os03g29740.1 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.08 Archaeplastida
LOC_Os07g41790.2 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.1 Archaeplastida
LOC_Os08g08040.1 No alias component LSm7 of U6-associated LSm accessory... 0.04 Archaeplastida
MA_91807g0010 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.02 Archaeplastida
Mp4g05710.1 No alias component LSm7 of U6-associated LSm accessory... 0.05 Archaeplastida
Mp4g07410.1 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.08 Archaeplastida
Pp3c21_9740V3.1 No alias Small nuclear ribonucleoprotein family protein 0.04 Archaeplastida
Pp3c5_21480V3.1 No alias probable small nuclear ribonucleoprotein G 0.03 Archaeplastida
Pp3c8_4480V3.1 No alias Small nuclear ribonucleoprotein family protein 0.04 Archaeplastida
Smo227744 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 Archaeplastida
Solyc09g009640.3.1 No alias component LSm7 of U6-associated LSm accessory... 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005732 small nucleolar ribonucleoprotein complex ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000741 karyogamy IEP Neighborhood
CC GO:0000785 chromatin IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
CC GO:0000932 P-body IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0005102 signaling receptor binding IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
BP GO:0006333 chromatin assembly or disassembly IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006407 rRNA export from nucleus IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0010197 polar nucleus fusion IEP Neighborhood
CC GO:0015030 Cajal body IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
CC GO:0016604 nuclear body IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0030527 structural constituent of chromatin IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034605 cellular response to heat IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0035770 ribonucleoprotein granule IEP Neighborhood
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0048284 organelle fusion IEP Neighborhood
BP GO:0048316 seed development IEP Neighborhood
BP GO:0051029 rRNA transport IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0070370 cellular heat acclimation IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0097064 ncRNA export from nucleus IEP Neighborhood
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 9 71
No external refs found!