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  5. Zm00001e005170_P001

Zm00001e005170_P001


Description : transcription factor (KNOX)


Gene families : OG0000263 (Archaeplastida) Phylogenetic Tree(s): OG0000263_tree ,
OG_05_0000128 (LandPlants) Phylogenetic Tree(s): OG_05_0000128_tree ,
OG_06_0000802 (SeedPlants) Phylogenetic Tree(s): OG_06_0000802_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e005170_P001
Cluster HCCA: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00264520 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
AMTR_s00045p00169620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
AMTR_s00085p00165180 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AT1G62360 BUM1, SHL, STM,... KNOX/ELK homeobox transcription factor 0.02 Archaeplastida
AT1G62990 KNAT7, IXR11 KNOTTED-like homeobox of Arabidopsis thaliana 7 0.02 Archaeplastida
AT1G70510 KNAT2, ATK1 KNOTTED-like from Arabidopsis thaliana 2 0.02 Archaeplastida
AT4G08150 BP, BP1, KNAT1 KNOTTED-like from Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01007715001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01018257001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
GSVIVT01030488001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
GSVIVT01031241001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
GSVIVT01038787001 No alias No description available 0.01 Archaeplastida
LOC_Os01g19694.1 No alias transcription factor (KNOX) 0.04 Archaeplastida
LOC_Os03g51690.2 No alias transcription factor (KNOX) 0.04 Archaeplastida
LOC_Os03g56140.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
LOC_Os07g03770.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
MA_10428500g0010 No alias transcription factor (KNOX) 0.03 Archaeplastida
MA_486460g0010 No alias Homeobox protein knotted-1-like 3 OS=Arabidopsis... 0.02 Archaeplastida
Pp3c5_26440V3.1 No alias KNOTTED1-like homeobox gene 3 0.02 Archaeplastida
Pp3c6_1550V3.1 No alias KNOTTED1-like homeobox gene 3 0.02 Archaeplastida
Solyc02g081120.4.1 No alias transcription factor (KNOX) 0.04 Archaeplastida
Solyc04g077210.3.1 No alias transcription factor (KNOX) 0.02 Archaeplastida
Solyc07g007120.3.1 No alias transcription factor (KNOX) 0.02 Archaeplastida
Solyc12g010410.3.1 No alias transcription factor (KNOX) 0.02 Archaeplastida
Zm00001e005545_P001 No alias transcription factor (KNOX) 0.04 Archaeplastida
Zm00001e011538_P001 No alias transcription factor (KNOX) 0.03 Archaeplastida
Zm00001e017489_P001 No alias transcription factor (KNOX) 0.03 Archaeplastida
Zm00001e032761_P001 No alias transcription factor (KNOX) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
MF GO:0008519 ammonium transmembrane transporter activity IEP Neighborhood
BP GO:0015696 ammonium transport IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR005541 KNOX2 138 181
IPR005540 KNOX1 85 123
IPR008422 Homeobox_KN_domain 262 301
IPR005539 ELK_dom 222 243
No external refs found!