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  5. Zm00001e005583_P001

Zm00001e005583_P001


Description : cofactor component GIF of GRF-GIF transcriptional complex


Gene families : OG0001550 (Archaeplastida) Phylogenetic Tree(s): OG0001550_tree ,
OG_05_0001254 (LandPlants) Phylogenetic Tree(s): OG_05_0001254_tree ,
OG_06_0001389 (SeedPlants) Phylogenetic Tree(s): OG_06_0001389_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e005583_P001
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00079p00157130 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.08 Archaeplastida
AT5G28640 GIF1, GIF, ATGIF1, AN3 SSXT family protein 0.12 Archaeplastida
GSVIVT01027418001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.04 Archaeplastida
GSVIVT01036262001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.06 Archaeplastida
MA_137340g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_88944g0010 No alias cofactor component GIF of GRF-GIF transcriptional complex 0.03 Archaeplastida
Mp6g14670.1 No alias cofactor component GIF of GRF-GIF transcriptional complex 0.01 Archaeplastida
Pp3c13_15090V3.1 No alias GRF1-interacting factor 3 0.02 Archaeplastida
Pp3c3_21060V3.1 No alias GRF1-interacting factor 3 0.02 Archaeplastida
Solyc04g009820.3.1 No alias cofactor component GIF of GRF-GIF transcriptional complex 0.04 Archaeplastida
Solyc11g006230.3.1 No alias cofactor component GIF of GRF-GIF transcriptional complex 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003713 transcription coactivator activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004860 protein kinase inhibitor activity IEP Neighborhood
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0007050 cell cycle arrest IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
MF GO:0019210 kinase inhibitor activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0045786 negative regulation of cell cycle IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR007726 SS18_fam 22 76
No external refs found!