Zm00001e005702_P001

Description : phytochrome photoreceptor (PHY)

Gene families : OG0000908 (Archaeplastida) Phylogenetic Tree(s): OG0000908_tree ,
OG_05_0000972 (LandPlants) Phylogenetic Tree(s): OG_05_0000972_tree ,
OG_06_0003182 (SeedPlants) Phylogenetic Tree(s): OG_06_0003182_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e005702_P001
Cluster	HCCA: Cluster_342

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020510.131	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.01	Archaeplastida
GSVIVT01030081001	No alias	External stimuli response.light.red/far red light.PHY...	0.05	Archaeplastida
GSVIVT01031354001	No alias	External stimuli response.light.red/far red light.PHY...	0.06	Archaeplastida
GSVIVT01034989001	No alias	External stimuli response.light.red/far red light.PHY...	0.04	Archaeplastida
MA_10435530g0010	No alias	phytochrome photoreceptor (PHY). temperature sensor...	0.03	Archaeplastida
Pp3c25_2610V3.1	No alias	phytochrome B	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	None	Extended
MF	GO:0004673	protein histidine kinase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007165	signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009584	detection of visible light	IEA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0016301	kinase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	None	Extended
BP	GO:0018298	protein-chromophore linkage	IEA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Neighborhood
MF	GO:0005516	calmodulin binding	IEP	Neighborhood
CC	GO:0005795	Golgi stack	IEP	Neighborhood
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Neighborhood
MF	GO:0008455	alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	IEP	Neighborhood
BP	GO:0009311	oligosaccharide metabolic process	IEP	Neighborhood
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Neighborhood
CC	GO:0031984	organelle subcompartment	IEP	Neighborhood
BP	GO:0035556	intracellular signal transduction	IEP	Neighborhood
CC	GO:0044431	Golgi apparatus part	IEP	Neighborhood
CC	GO:0098791	Golgi subcompartment	IEP	Neighborhood
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003594	HATPase_C	1007	1112
IPR013654	PAS_2	68	183
IPR013515	Phytochrome_cen-reg	412	584
IPR003018	GAF	217	399
IPR013767	PAS_fold	751	873
IPR013767	PAS_fold	621	734
IPR003661	HisK_dim/P	900	958

External Links

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Zm00001e005702_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation