Zm00001e005988_P001

Description : component RPL4 of LSU proteome component

Gene families : OG0002429 (Archaeplastida) Phylogenetic Tree(s): OG0002429_tree ,
OG_05_0002329 (LandPlants) Phylogenetic Tree(s): OG_05_0002329_tree ,
OG_06_0002237 (SeedPlants) Phylogenetic Tree(s): OG_06_0002237_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e005988_P001
Cluster	HCCA: Cluster_137

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00023p00210590	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	Archaeplastida
AMTR_s00105p00023120	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	Archaeplastida
AT3G09630	No alias	Ribosomal protein L4/L1 family	0.18	Archaeplastida
AT5G02870	No alias	Ribosomal protein L4/L1 family	0.27	Archaeplastida
Cpa\|evm.model.tig00022075.53	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.19	Archaeplastida
Cre09.g397697	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	Archaeplastida
GSVIVT01025547001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	Archaeplastida
Gb_00290	No alias	component RPL4 of LSU proteome component	0.02	Archaeplastida
Gb_21885	No alias	component RPL4 of LSU proteome component	0.04	Archaeplastida
LOC_Os03g58204.1	No alias	component RPL4 of LSU proteome component	0.23	Archaeplastida
LOC_Os07g08330.1	No alias	component RPL4 of LSU proteome component	0.34	Archaeplastida
MA_9991417g0010	No alias	component RPL4 of LSU proteome component	0.12	Archaeplastida
Mp4g20310.1	No alias	component RPL4 of LSU proteome component	0.22	Archaeplastida
Pp3c20_19140V3.1	No alias	Ribosomal protein L4/L1 family	0.05	Archaeplastida
Pp3c23_6290V3.1	No alias	Ribosomal protein L4/L1 family	0.04	Archaeplastida
Pp3c23_9380V3.1	No alias	Ribosomal protein L4/L1 family	0.07	Archaeplastida
Pp3c24_3760V3.1	No alias	Ribosomal protein L4/L1 family	0.07	Archaeplastida
Solyc09g007250.4.1	No alias	component RPL4 of LSU proteome component	0.17	Archaeplastida
Solyc10g084350.2.1	No alias	component RPL4 of LSU proteome component	0.21	Archaeplastida
Solyc10g086010.2.1	No alias	component RPL4 of LSU proteome component	0.13	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
CC	GO:0005730	nucleolus	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
MF	GO:0008097	5S rRNA binding	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
CC	GO:0031974	membrane-enclosed lumen	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
CC	GO:0043233	organelle lumen	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0070013	intracellular organelle lumen	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR025755	Ribos_L4_C_dom	279	352
IPR002136	Ribosomal_L4/L1e	25	266

External Links

No external refs found!

Zm00001e005988_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation