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  5. Zm00001e006886_P001

Zm00001e006886_P001


Description : starch synthase (SSIII)


Gene families : OG0000161 (Archaeplastida) Phylogenetic Tree(s): OG0000161_tree ,
OG_05_0005539 (LandPlants) Phylogenetic Tree(s): OG_05_0005539_tree ,
OG_06_0006824 (SeedPlants) Phylogenetic Tree(s): OG_06_0006824_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e006886_P001
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00214840 evm_27.TU.AmTr_v1... Probable starch synthase 4, chloroplastic/amyloplastic... 0.01 Archaeplastida
GSVIVT01011429001 No alias Carbohydrate metabolism.starch... 0.02 Archaeplastida
LOC_Os04g53310.1 No alias starch synthase (SSIII) 0.03 Archaeplastida
Mp2g08030.1 No alias Probable starch synthase 4, chloroplastic/amyloplastic... 0.01 Archaeplastida
Solyc02g088000.3.1 No alias starch synthase (SSII) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:2001070 starch binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005516 calmodulin binding IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
InterPro domains Description Start Stop
IPR013534 Starch_synth_cat_dom 741 928
IPR005085 CBM25 646 730
IPR005085 CBM25 310 389
IPR005085 CBM25 484 570
IPR001296 Glyco_trans_1 989 1110
No external refs found!