Zm00001e007189_P001

Description : linker histone (H1)

Gene families : OG0000491 (Archaeplastida) Phylogenetic Tree(s): OG0000491_tree ,
OG_05_0000417 (LandPlants) Phylogenetic Tree(s): OG_05_0000417_tree ,
OG_06_0000288 (SeedPlants) Phylogenetic Tree(s): OG_06_0000288_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e007189_P001
Cluster	HCCA: Cluster_29

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00264270	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H1 linker histone	0.05	Archaeplastida
AMTR_s00057p00112340	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H1 linker histone	0.04	Archaeplastida
AMTR_s00185p00055680	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H1 linker histone	0.03	Archaeplastida
AT1G06760	No alias	winged-helix DNA-binding transcription factor family protein	0.12	Archaeplastida
AT2G30620	No alias	winged-helix DNA-binding transcription factor family protein	0.04	Archaeplastida
Cpa\|evm.model.tig00020780.71	No alias	No description available	0.01	Archaeplastida
Cre13.g567450	No alias	Chromatin organisation.histones.H1 linker histone	0.21	Archaeplastida
GSVIVT01028074001	No alias	Chromatin organisation.histones.H1 linker histone	0.07	Archaeplastida
Gb_02738	No alias	linker histone (H1)	0.19	Archaeplastida
Gb_03348	No alias	linker histone (H1)	0.11	Archaeplastida
LOC_Os04g18090.1	No alias	linker histone (H1)	0.24	Archaeplastida
LOC_Os07g08710.1	No alias	linker histone (H1)	0.09	Archaeplastida
MA_102457g0010	No alias	linker histone (H1)	0.14	Archaeplastida
MA_10428525g0020	No alias	linker histone (H1)	0.03	Archaeplastida
MA_10436125g0010	No alias	linker histone (H1)	0.04	Archaeplastida
MA_10436125g0020	No alias	linker histone (H1)	0.05	Archaeplastida
MA_500183g0010	No alias	linker histone (H1)	0.13	Archaeplastida
MA_5293931g0010	No alias	No annotation	0.09	Archaeplastida
MA_6021364g0010	No alias	linker histone (H1)	0.07	Archaeplastida
MA_6251451g0010	No alias	No annotation	0.08	Archaeplastida
Mp6g03150.1	No alias	linker histone (H1)	0.15	Archaeplastida
Pp3c18_14270V3.1	No alias	winged-helix DNA-binding transcription factor family protein	0.02	Archaeplastida
Pp3c18_19330V3.1	No alias	winged-helix DNA-binding transcription factor family protein	0.06	Archaeplastida
Solyc09g066100.3.1	No alias	linker histone (H1)	0.11	Archaeplastida
Solyc09g083380.4.1	No alias	linker histone (H1)	0.17	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
CC	GO:0044217	other organism part	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	36	103

External Links

No external refs found!

Zm00001e007189_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation