AT1G12890

Description : Integrase-type DNA-binding superfamily protein

Gene families : OG0000003 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000001 (LandPlants) Phylogenetic Tree(s): OG_05_0000001_tree ,
OG_06_0000007 (SeedPlants) Phylogenetic Tree(s): OG_06_0000007_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G12890
Cluster	HCCA: Cluster_116

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00264660	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
AMTR_s00007p00268280	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AMTR_s00009p00148470	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AMTR_s00010p00095120	evm_27.TU.AmTr_v1...	Ethylene-responsive transcription factor ERF110...	0.03	Archaeplastida
AMTR_s00010p00240320	evm_27.TU.AmTr_v1...	Ethylene-responsive transcription factor FZP OS=Oryza...	0.05	Archaeplastida
AMTR_s00016p00092590	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AMTR_s00021p00185480	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AMTR_s00025p00249140	evm_27.TU.AmTr_v1...	Cell wall.cutin and suberin.biosynthesis...	0.03	Archaeplastida
AMTR_s00026p00180130	evm_27.TU.AmTr_v1...	Ethylene-responsive transcription factor ERF084...	0.04	Archaeplastida
AMTR_s00034p00206140	evm_27.TU.AmTr_v1...	No description available	0.04	Archaeplastida
AMTR_s00040p00180260	evm_27.TU.AmTr_v1...	No description available	0.02	Archaeplastida
AMTR_s00049p00214620	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AMTR_s00058p00066390	evm_27.TU.AmTr_v1...	External stimuli response.biotic...	0.03	Archaeplastida
AMTR_s00095p00096190	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AT1G01250	No alias	Integrase-type DNA-binding superfamily protein	0.05	Archaeplastida
AT1G15360	WIN1, SHN1	Integrase-type DNA-binding superfamily protein	0.06	Archaeplastida
AT1G21910	DREB26	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
AT1G24590	DRN-LIKE, ESR2,...	DORNROSCHEN-like	0.03	Archaeplastida
AT1G80580	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
AT2G22200	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
AT3G16280	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
AT3G57600	No alias	Integrase-type DNA-binding superfamily protein	0.07	Archaeplastida
AT4G23750	TMO3, CRF2	cytokinin response factor 2	0.02	Archaeplastida
AT4G27950	CRF4	cytokinin response factor 4	0.04	Archaeplastida
AT5G13330	Rap2.6L	related to AP2 6l	0.04	Archaeplastida
AT5G25390	SHN2	Integrase-type DNA-binding superfamily protein	0.06	Archaeplastida
AT5G25810	tny	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
AT5G50080	ERF110	ethylene response factor 110	0.05	Archaeplastida
AT5G51990	CBF4, DREB1D	C-repeat-binding factor 4	0.04	Archaeplastida
GSVIVT01001089001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01002195001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01008649001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
GSVIVT01013931001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01013934001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01017315001	No alias	Cell wall.cutin and suberin.biosynthesis...	0.04	Archaeplastida
GSVIVT01017542001	No alias	Ethylene-responsive transcription factor ERF084...	0.03	Archaeplastida
GSVIVT01032961001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01032983001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01033416001	No alias	External stimuli response.biotic...	0.02	Archaeplastida
GSVIVT01035852001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
GSVIVT01036228001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.05	Archaeplastida
Gb_03783	No alias	transcription factor (ERF)	0.03	Archaeplastida
Gb_07475	No alias	no hits & (original description: none)	0.03	Archaeplastida
Gb_12583	No alias	transcription factor (DREB)	0.03	Archaeplastida
Gb_24321	No alias	transcription factor (DREB)	0.03	Archaeplastida
Gb_24891	No alias	transcription factor (ERF)	0.05	Archaeplastida
Gb_26662	No alias	transcription factor (ERF)	0.03	Archaeplastida
Gb_29220	No alias	transcription factor (ERF)	0.05	Archaeplastida
Gb_29359	No alias	transcription factor (ERF). transcription factor (ERN1)	0.05	Archaeplastida
Gb_32995	No alias	Ethylene-responsive transcription factor ERF016...	0.04	Archaeplastida
Gb_37188	No alias	transcription factor (DREB)	0.02	Archaeplastida
Gb_41020	No alias	transcription factor (DREB)	0.03	Archaeplastida
Gb_41836	No alias	transcription factor (ERF)	0.03	Archaeplastida
LOC_Os01g10370.1	No alias	transcription factor (DREB)	0.05	Archaeplastida
LOC_Os01g73770.1	No alias	transcription factor (DREB)	0.03	Archaeplastida
LOC_Os02g10760.1	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.03	Archaeplastida
LOC_Os03g08460.1	No alias	Ethylene-responsive transcription factor ERF073...	0.03	Archaeplastida
LOC_Os04g46250.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
LOC_Os04g46440.1	No alias	transcription factor (DREB)	0.03	Archaeplastida
LOC_Os04g52090.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
LOC_Os04g55520.1	No alias	transcription factor (DREB)	0.03	Archaeplastida
LOC_Os05g41780.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
LOC_Os06g09790.1	No alias	Ethylene-responsive transcription factor ERF018...	0.02	Archaeplastida
LOC_Os06g40150.1	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.05	Archaeplastida
LOC_Os08g35240.1	No alias	Ethylene-responsive transcription factor ERF017...	0.03	Archaeplastida
LOC_Os10g38000.1	No alias	transcription factor (DREB)	0.03	Archaeplastida
LOC_Os12g39330.1	No alias	transcription factor (ERF). transcription factor (ERN1)	0.03	Archaeplastida
MA_10242823g0010	No alias	transcription factor (DREB)	0.02	Archaeplastida
MA_10430231g0010	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.04	Archaeplastida
MA_10433310g0010	No alias	transcription factor (DREB)	0.03	Archaeplastida
MA_10434101g0010	No alias	transcription factor (DREB)	0.05	Archaeplastida
MA_10434489g0020	No alias	transcription factor (DREB)	0.05	Archaeplastida
MA_135279g0010	No alias	transcription factor (ERF)	0.04	Archaeplastida
MA_15251g0010	No alias	transcription factor (DREB)	0.05	Archaeplastida
MA_162045g0010	No alias	transcription factor (DREB)	0.03	Archaeplastida
MA_17001g0020	No alias	transcription factor (DREB)	0.05	Archaeplastida
MA_214063g0010	No alias	transcription factor (DREB)	0.06	Archaeplastida
MA_411387g0010	No alias	transcription factor (ERF)	0.04	Archaeplastida
MA_4182g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_426919g0020	No alias	transcription factor (DREB)	0.04	Archaeplastida
MA_428433g0010	No alias	transcription factor (DREB)	0.04	Archaeplastida
MA_442451g0010	No alias	transcription factor (ERF)	0.03	Archaeplastida
MA_500288g0010	No alias	transcription factor (DREB)	0.02	Archaeplastida
MA_54341g0010	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.06	Archaeplastida
MA_5730259g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_647924g0010	No alias	transcription factor (DREB)	0.04	Archaeplastida
MA_66742g0010	No alias	transcription factor (DREB)	0.03	Archaeplastida
MA_8574268g0010	No alias	transcription factor (DREB)	0.05	Archaeplastida
MA_904750g0010	No alias	transcription factor (DREB)	0.02	Archaeplastida
MA_94228g0010	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.04	Archaeplastida
Pp3c10_17870V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
Pp3c10_7030V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c21_13130V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
Pp3c25_1760V3.1	No alias	related to AP2 11	0.03	Archaeplastida
Pp3c26_14710V3.1	No alias	ethylene responsive element binding factor 1	0.02	Archaeplastida
Pp3c2_15730V3.1	No alias	cytokinin response factor 5	0.03	Archaeplastida
Pp3c3_33930V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c5_880V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c6_20480V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
Pp3c8_7340V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c9_2020V3.1	No alias	erf domain protein 9	0.02	Archaeplastida
Solyc01g067540.2.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
Solyc03g005500.1.1	No alias	transcription factor (ERF). transcription factor (DREB)	0.03	Archaeplastida
Solyc03g007460.3.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
Solyc03g116610.3.1	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.03	Archaeplastida
Solyc03g118190.4.1	No alias	transcription factor (ERF)	0.04	Archaeplastida
Solyc04g080910.1.1	No alias	transcription factor (DREB)	0.03	Archaeplastida
Solyc05g050830.3.1	No alias	transcription factor (DREB)	0.05	Archaeplastida
Solyc05g052040.1.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
Solyc06g066540.1.1	No alias	transcription factor (DREB)	0.04	Archaeplastida
Solyc06g068360.3.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
Solyc08g007230.3.1	No alias	transcription factor (ERF)	0.04	Archaeplastida
Solyc08g078190.2.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
Solyc11g011750.1.1	No alias	transcription factor (ERF)	0.05	Archaeplastida
Zm00001e001139_P001	No alias	Ethylene-responsive transcription factor ERF014...	0.04	Archaeplastida
Zm00001e003579_P001	No alias	Ethylene-responsive transcription factor ERF015...	0.04	Archaeplastida
Zm00001e006139_P001	No alias	transcription factor (ERF)	0.02	Archaeplastida
Zm00001e014008_P002	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.04	Archaeplastida
Zm00001e014413_P001	No alias	transcription factor (DREB)	0.04	Archaeplastida
Zm00001e014415_P001	No alias	transcription factor (DREB)	0.03	Archaeplastida
Zm00001e015328_P001	No alias	transcription factor (DREB)	0.03	Archaeplastida
Zm00001e024669_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e027350_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e032434_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e034661_P001	No alias	Ethylene-responsive transcription factor ERF115...	0.03	Archaeplastida
Zm00001e034741_P001	No alias	transcription factor (ERF). transcription factor (ERN1)	0.03	Archaeplastida
Zm00001e035811_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e036130_P001	No alias	transcription factor (DREB)	0.02	Archaeplastida
Zm00001e036201_P001	No alias	Ethylene-responsive transcription factor ERF014...	0.02	Archaeplastida
Zm00001e037404_P001	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
BP	GO:0006308	DNA catabolic process	IEP	Neighborhood
BP	GO:0006473	protein acetylation	IEP	Neighborhood
BP	GO:0006949	syncytium formation	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
BP	GO:0009653	anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0009886	post-embryonic animal morphogenesis	IEP	Neighborhood
BP	GO:0009900	dehiscence	IEP	Neighborhood
BP	GO:0009908	flower development	IEP	Neighborhood
BP	GO:0009913	epidermal cell differentiation	IEP	Neighborhood
BP	GO:0010047	fruit dehiscence	IEP	Neighborhood
BP	GO:0010160	formation of animal organ boundary	IEP	Neighborhood
CC	GO:0010169	thioglucosidase complex	IEP	Neighborhood
MF	GO:0010180	thioglucosidase binding	IEP	Neighborhood
BP	GO:0010252	auxin homeostasis	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
BP	GO:0030855	epithelial cell differentiation	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0043492	ATPase activity, coupled to movement of substances	IEP	Neighborhood
BP	GO:0044403	symbiont process	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
BP	GO:0048366	leaf development	IEP	Neighborhood
BP	GO:0048367	shoot system development	IEP	Neighborhood
BP	GO:0048437	floral organ development	IEP	Neighborhood
BP	GO:0048440	carpel development	IEP	Neighborhood
BP	GO:0048441	petal development	IEP	Neighborhood
BP	GO:0048443	stamen development	IEP	Neighborhood
BP	GO:0048444	floral organ morphogenesis	IEP	Neighborhood
BP	GO:0048446	petal morphogenesis	IEP	Neighborhood
BP	GO:0048481	plant ovule development	IEP	Neighborhood
BP	GO:0048507	meristem development	IEP	Neighborhood
BP	GO:0048608	reproductive structure development	IEP	Neighborhood
BP	GO:0048731	system development	IEP	Neighborhood
BP	GO:0048827	phyllome development	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
BP	GO:0048859	formation of anatomical boundary	IEP	Neighborhood
BP	GO:0080154	regulation of fertilization	IEP	Neighborhood
BP	GO:0080155	regulation of double fertilization forming a zygote and endosperm	IEP	Neighborhood
BP	GO:0090567	reproductive shoot system development	IEP	Neighborhood
BP	GO:0090697	post-embryonic plant organ morphogenesis	IEP	Neighborhood
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	Neighborhood
BP	GO:0099402	plant organ development	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	20	68

External Links

No external refs found!

AT1G12890

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation