AT1G12950 (RSH2)

Aliases : RSH2

Description : root hair specific 2

Gene families : OG0001146 (Archaeplastida) Phylogenetic Tree(s): OG0001146_tree ,
OG_05_0000684 (LandPlants) Phylogenetic Tree(s): OG_05_0000684_tree ,
OG_06_0000337 (SeedPlants) Phylogenetic Tree(s): OG_06_0000337_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G12950
Cluster	HCCA: Cluster_67

Target	Alias	Description	ECC score	Gene Family Method
AT5G38030	No alias	MATE efflux family protein	0.04	Archaeplastida
GSVIVT01004078001	No alias	Solute transport.carrier-mediated transport.MOP...	0.03	Archaeplastida
GSVIVT01028879001	No alias	Solute transport.carrier-mediated transport.MOP...	0.04	Archaeplastida
GSVIVT01028882001	No alias	Solute transport.carrier-mediated transport.MOP...	0.03	Archaeplastida
GSVIVT01028885001	No alias	Solute transport.carrier-mediated transport.MOP...	0.12	Archaeplastida
Gb_24164	No alias	metabolite transporter (DTX)	0.04	Archaeplastida
LOC_Os08g43654.1	No alias	metabolite transporter (DTX)	0.03	Archaeplastida
LOC_Os08g44870.1	No alias	metabolite transporter (DTX)	0.06	Archaeplastida
LOC_Os10g11860.1	No alias	metabolite transporter (DTX)	0.17	Archaeplastida
MA_392344g0010	No alias	metabolite transporter (DTX)	0.03	Archaeplastida
Solyc01g109310.3.1	No alias	metabolite transporter (DTX)	0.03	Archaeplastida
Solyc03g025190.4.1	No alias	metabolite transporter (DTX)	0.08	Archaeplastida
Solyc03g025250.4.1	No alias	metabolite transporter (DTX)	0.09	Archaeplastida
Solyc06g036130.4.1	No alias	metabolite transporter (DTX)	0.07	Archaeplastida
Solyc10g051130.3.1	No alias	metabolite transporter (DTX)	0.05	Archaeplastida
Zm00001e022039_P001	No alias	metabolite transporter (DTX)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010053	root epidermal cell differentiation	None	Extended
MF	GO:0015291	secondary active transmembrane transporter activity	None	Extended
MF	GO:0015297	antiporter activity	ISS	Interproscan
CC	GO:0016020	membrane	ISS	Interproscan
BP	GO:0021700	developmental maturation	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048469	cell maturation	None	Extended
BP	GO:0048764	trichoblast maturation	None	Extended
BP	GO:0048765	root hair cell differentiation	RCA	Interproscan
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0090627	plant epidermal cell differentiation	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006857	oligopeptide transport	IEP	Neighborhood
BP	GO:0009624	response to nematode	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0046688	response to copper ion	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002528	MATE_fam	298	459
IPR002528	MATE_fam	77	237

External Links

No external refs found!

AT1G12950 (RSH2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation