AT1G12950 (RSH2)


Aliases : RSH2

Description : root hair specific 2


Gene families : OG0001146 (Archaeplastida) Phylogenetic Tree(s): OG0001146_tree ,
OG_05_0000684 (LandPlants) Phylogenetic Tree(s): OG_05_0000684_tree ,
OG_06_0000337 (SeedPlants) Phylogenetic Tree(s): OG_06_0000337_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G12950
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AT5G38030 No alias MATE efflux family protein 0.04 Archaeplastida
GSVIVT01004078001 No alias Solute transport.carrier-mediated transport.MOP... 0.03 Archaeplastida
GSVIVT01028879001 No alias Solute transport.carrier-mediated transport.MOP... 0.04 Archaeplastida
GSVIVT01028882001 No alias Solute transport.carrier-mediated transport.MOP... 0.03 Archaeplastida
GSVIVT01028885001 No alias Solute transport.carrier-mediated transport.MOP... 0.12 Archaeplastida
Gb_24164 No alias metabolite transporter (DTX) 0.04 Archaeplastida
LOC_Os08g43654.1 No alias metabolite transporter (DTX) 0.03 Archaeplastida
LOC_Os08g44870.1 No alias metabolite transporter (DTX) 0.06 Archaeplastida
LOC_Os10g11860.1 No alias metabolite transporter (DTX) 0.17 Archaeplastida
MA_392344g0010 No alias metabolite transporter (DTX) 0.03 Archaeplastida
Solyc01g109310.3.1 No alias metabolite transporter (DTX) 0.03 Archaeplastida
Solyc03g025190.4.1 No alias metabolite transporter (DTX) 0.08 Archaeplastida
Solyc03g025250.4.1 No alias metabolite transporter (DTX) 0.09 Archaeplastida
Solyc06g036130.4.1 No alias metabolite transporter (DTX) 0.07 Archaeplastida
Solyc10g051130.3.1 No alias metabolite transporter (DTX) 0.05 Archaeplastida
Zm00001e022039_P001 No alias metabolite transporter (DTX) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005215 transporter activity ISS Interproscan
CC GO:0005886 plasma membrane ISM Interproscan
MF GO:0015297 antiporter activity ISS Interproscan
CC GO:0016020 membrane ISS Interproscan
BP GO:0048765 root hair cell differentiation RCA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006857 oligopeptide transport IEP Neighborhood
BP GO:0009624 response to nematode IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0046688 response to copper ion IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002528 MATE_fam 298 459
IPR002528 MATE_fam 77 237
No external refs found!