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  5. Zm00001e009847_P001

Zm00001e009847_P001


Description : ligand-gated cation channel (GLR)


Gene families : OG0000085 (Archaeplastida) Phylogenetic Tree(s): OG0000085_tree ,
OG_05_0018023 (LandPlants) Phylogenetic Tree(s): OG_05_0018023_tree ,
OG_06_0017597 (SeedPlants) Phylogenetic Tree(s): OG_06_0017597_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e009847_P001
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00140120 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
AMTR_s00019p00178550 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.05 Archaeplastida
AMTR_s00019p00178690 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.04 Archaeplastida
AMTR_s00019p00180760 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
AMTR_s00019p00181830 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
AMTR_s00019p00182190 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
AMTR_s00019p00182440 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
AMTR_s00019p00182630 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.05 Archaeplastida
AMTR_s00021p00172130 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.07 Archaeplastida
AMTR_s00021p00176450 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
AMTR_s00023p00244390 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.05 Archaeplastida
AT2G24710 GLR2.3, ATGLR2.3 glutamate receptor 2.3 0.04 Archaeplastida
AT2G24720 GLR2.2, ATGLR2.2 glutamate receptor 2.2 0.03 Archaeplastida
AT2G29100 ATGLR2.9, GLR2.9 glutamate receptor 2.9 0.03 Archaeplastida
AT2G29110 GLR2.8, ATGLR2.8 glutamate receptor 2.8 0.05 Archaeplastida
AT2G29120 GLR2.7, ATGLR2.7 glutamate receptor 2.7 0.06 Archaeplastida
AT2G32390 ATGLR3.5, GLR6, GLR3.5 glutamate receptor 3.5 0.03 Archaeplastida
AT2G32400 GLR3.7, ATGLR3.7, GLR5 glutamate receptor 5 0.03 Archaeplastida
AT3G04110 ATGLR1.1, GLR1.1, GLR1 glutamate receptor 1.1 0.06 Archaeplastida
AT3G07520 GLR1.4, ATGLR1.4 glutamate receptor 1.4 0.05 Archaeplastida
AT4G31710 GLR2.4, ATGLR2.4 glutamate receptor 2.4 0.02 Archaeplastida
AT5G11180 ATGLR2.6, GLR2.6 glutamate receptor 2.6 0.03 Archaeplastida
AT5G11210 GLR2.5, ATGLR2.5 glutamate receptor 2.5 0.05 Archaeplastida
AT5G27100 GLR2.1, ATGLR2.1 glutamate receptor 2.1 0.04 Archaeplastida
AT5G48400 ATGLR1.2, GLR1.2 Glutamate receptor family protein 0.06 Archaeplastida
AT5G48410 ATGLR1.3, GLR1.3 glutamate receptor 1.3 0.06 Archaeplastida
GSVIVT01014245001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
GSVIVT01021155001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
GSVIVT01021159001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.04 Archaeplastida
GSVIVT01030600001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.04 Archaeplastida
GSVIVT01030602001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
GSVIVT01033129001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.05 Archaeplastida
GSVIVT01033156001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
Gb_16129 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
Gb_27767 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
Gb_28362 No alias ligand-gated cation channel (GLR) 0.08 Archaeplastida
Gb_28364 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Gb_39753 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
LOC_Os02g54640.1 No alias ligand-gated cation channel (GLR) 0.07 Archaeplastida
LOC_Os07g01310.1 No alias ligand-gated cation channel (GLR) 0.05 Archaeplastida
LOC_Os09g26144.1 No alias ligand-gated cation channel (GLR) 0.08 Archaeplastida
LOC_Os09g26160.1 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
MA_10226232g0010 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
MA_103602g0010 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
MA_10426811g0010 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
MA_10428521g0010 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
MA_10429132g0010 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
MA_110963g0010 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
MA_23282g0010 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
MA_32301g0010 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
MA_43501g0010 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
MA_46902g0010 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
MA_7310191g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_7872524g0010 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
MA_85337g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_958834g0010 No alias ligand-gated cation channel (GLR) 0.06 Archaeplastida
MA_9796468g0010 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
MA_9896648g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c12_5540V3.1 No alias glutamate receptor 3.3 0.03 Archaeplastida
Pp3c15_25650V3.1 No alias glutamate receptor 3.3 0.03 Archaeplastida
Solyc02g077290.2.1 No alias ligand-gated cation channel (GLR) 0.07 Archaeplastida
Solyc06g063170.3.1 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
Solyc06g063180.3.1 No alias ligand-gated cation channel (GLR) 0.07 Archaeplastida
Solyc06g063190.3.1 No alias ligand-gated cation channel (GLR) 0.07 Archaeplastida
Solyc06g063200.2.1 No alias ligand-gated cation channel (GLR) 0.06 Archaeplastida
Solyc06g063210.3.1 No alias ligand-gated cation channel (GLR) 0.06 Archaeplastida
Solyc07g052400.3.1 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
Solyc08g006500.4.1 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
Zm00001e013023_P001 No alias ligand-gated cation channel (GLR) 0.06 Archaeplastida
Zm00001e023728_P001 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Zm00001e032646_P001 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated ion channel activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008519 ammonium transmembrane transporter activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0015696 ammonium transport IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001320 Iontro_rcpt 802 832
IPR001828 ANF_lig-bd_rcpt 54 402
IPR001638 Solute-binding_3/MltF_N 490 801
No external refs found!