AT3G15540 (MSG2, IAA19)

Aliases : MSG2, IAA19

Description : indole-3-acetic acid inducible 19

Gene families : OG0000129 (Archaeplastida) Phylogenetic Tree(s): OG0000129_tree ,
OG_05_0000051 (LandPlants) Phylogenetic Tree(s): OG_05_0000051_tree ,
OG_06_0016993 (SeedPlants) Phylogenetic Tree(s): OG_06_0016993_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G15540
Cluster	HCCA: Cluster_180

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00122p00019410	evm_27.TU.AmTr_v1...	Auxin-induced protein 22D OS=Vigna radiata var. radiata	0.03	Archaeplastida
AT1G52830	SHY1, IAA6	indole-3-acetic acid 6	0.04	Archaeplastida
AT1G80390	IAA15	indole-3-acetic acid inducible 15	0.04	Archaeplastida
AT2G46990	IAA20	indole-3-acetic acid inducible 20	0.03	Archaeplastida
AT3G16500	PAP1, IAA26	phytochrome-associated protein 1	0.05	Archaeplastida
GSVIVT01000720001	No alias	Auxin-induced protein 22D OS=Vigna radiata var. radiata	0.03	Archaeplastida
GSVIVT01000721001	No alias	Auxin-responsive protein IAA16 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01018101001	No alias	Auxin-responsive protein IAA7 OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01021779001	No alias	Auxin-induced protein 22D OS=Vigna radiata var. radiata	0.03	Archaeplastida
Gb_36672	No alias	Auxin-responsive protein IAA9 OS=Arabidopsis thaliana...	0.04	Archaeplastida
LOC_Os01g18360.1	No alias	Auxin-responsive protein IAA4 OS=Oryza sativa subsp....	0.03	Archaeplastida
LOC_Os02g13520.1	No alias	repressor component Aux/IAA of auxin receptor complex	0.04	Archaeplastida
LOC_Os03g43400.1	No alias	Auxin-responsive protein IAA11 OS=Oryza sativa subsp....	0.04	Archaeplastida
LOC_Os03g53150.1	No alias	Auxin-responsive protein IAA13 OS=Oryza sativa subsp....	0.05	Archaeplastida
LOC_Os03g58350.1	No alias	Auxin-responsive protein IAA14 OS=Oryza sativa subsp....	0.04	Archaeplastida
LOC_Os05g14180.1	No alias	Auxin-responsive protein IAA17 OS=Oryza sativa subsp....	0.02	Archaeplastida
LOC_Os05g44810.2	No alias	repressor component Aux/IAA of auxin receptor complex	0.03	Archaeplastida
LOC_Os06g07040.1	No alias	Auxin-responsive protein IAA20 OS=Oryza sativa subsp....	0.03	Archaeplastida
LOC_Os06g22870.1	No alias	Auxin-responsive protein IAA21 OS=Oryza sativa subsp....	0.03	Archaeplastida
LOC_Os12g40900.1	No alias	Auxin-responsive protein IAA31 OS=Oryza sativa subsp....	0.02	Archaeplastida
MA_10431093g0030	No alias	Auxin-responsive protein IAA30 OS=Oryza sativa subsp....	0.04	Archaeplastida
MA_123046g0010	No alias	repressor component Aux/IAA of auxin receptor complex	0.03	Archaeplastida
MA_38g0010	No alias	Auxin-responsive protein IAA27 OS=Arabidopsis thaliana...	0.03	Archaeplastida
MA_53529g0010	No alias	Auxin-responsive protein IAA30 OS=Oryza sativa subsp....	0.03	Archaeplastida
Mp6g05000.1	No alias	Auxin-responsive protein IAA17 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Smo85035	No alias	Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica	0.02	Archaeplastida
Solyc01g097290.4.1	No alias	Auxin-responsive protein IAA16 OS=Arabidopsis thaliana...	0.09	Archaeplastida
Solyc03g120380.3.1	No alias	Auxin-induced protein AUX22 OS=Glycine max...	0.04	Archaeplastida
Solyc04g054280.2.1	No alias	Auxin-induced protein 22B OS=Vigna radiata var. radiata...	0.06	Archaeplastida
Solyc06g008580.3.1	No alias	Auxin-induced protein 22D OS=Vigna radiata var. radiata...	0.08	Archaeplastida
Solyc06g008590.3.1	No alias	Auxin-responsive protein IAA16 OS=Arabidopsis thaliana...	0.05	Archaeplastida
Solyc06g053830.3.1	No alias	Auxin-responsive protein IAA16 OS=Arabidopsis thaliana...	0.05	Archaeplastida
Solyc06g084070.3.1	No alias	Auxin-responsive protein IAA4 OS=Arabidopsis thaliana...	0.06	Archaeplastida
Solyc09g065850.4.1	No alias	Auxin-induced protein 22D OS=Vigna radiata var. radiata...	0.04	Archaeplastida
Solyc09g083280.3.1	No alias	Auxin-induced protein IAA4 OS=Pisum sativum...	0.04	Archaeplastida
Solyc12g096980.3.1	No alias	Auxin-responsive protein IAA12 OS=Arabidopsis thaliana...	0.06	Archaeplastida
Zm00001e011863_P002	No alias	Auxin-responsive protein IAA24 OS=Oryza sativa subsp....	0.05	Archaeplastida
Zm00001e027153_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e028059_P002	No alias	Auxin-responsive protein IAA5 OS=Oryza sativa subsp....	0.03	Archaeplastida
Zm00001e030092_P002	No alias	Auxin-responsive protein IAA20 OS=Oryza sativa subsp....	0.03	Archaeplastida
Zm00001e034792_P001	No alias	Auxin-responsive protein IAA26 OS=Oryza sativa subsp....	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	NAS	Interproscan
BP	GO:0009637	response to blue light	None	Extended
BP	GO:0009638	phototropism	NAS	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	RCA	Interproscan
BP	GO:0009733	response to auxin	TAS	Interproscan
BP	GO:0009733	response to auxin	NAS	Interproscan
BP	GO:0009741	response to brassinosteroid	RCA	Interproscan
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048364	root development	None	Extended
BP	GO:0048527	lateral root development	RCA	Interproscan
BP	GO:0048528	post-embryonic root development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0080086	stamen filament development	IMP	Interproscan
BP	GO:0090696	post-embryonic plant organ development	None	Extended
BP	GO:0099402	plant organ development	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000578	embryonic axis specification	IEP	Neighborhood
MF	GO:0005102	signaling receptor binding	IEP	Neighborhood
CC	GO:0005615	extracellular space	IEP	Neighborhood
CC	GO:0005622	intracellular	IEP	Neighborhood
BP	GO:0006857	oligopeptide transport	IEP	Neighborhood
BP	GO:0007389	pattern specification process	IEP	Neighborhood
MF	GO:0008083	growth factor activity	IEP	Neighborhood
BP	GO:0008361	regulation of cell size	IEP	Neighborhood
BP	GO:0009411	response to UV	IEP	Neighborhood
BP	GO:0009414	response to water deprivation	IEP	Neighborhood
BP	GO:0009415	response to water	IEP	Neighborhood
BP	GO:0009641	shade avoidance	IEP	Neighborhood
BP	GO:0009645	response to low light intensity stimulus	IEP	Neighborhood
BP	GO:0009650	UV protection	IEP	Neighborhood
MF	GO:0009672	auxin:proton symporter activity	IEP	Neighborhood
BP	GO:0009798	axis specification	IEP	Neighborhood
BP	GO:0009825	multidimensional cell growth	IEP	Neighborhood
BP	GO:0009830	cell wall modification involved in abscission	IEP	Neighborhood
BP	GO:0009870	defense response signaling pathway, resistance gene-dependent	IEP	Neighborhood
BP	GO:0009914	hormone transport	IEP	Neighborhood
BP	GO:0009926	auxin polar transport	IEP	Neighborhood
BP	GO:0009942	longitudinal axis specification	IEP	Neighborhood
BP	GO:0009958	positive gravitropism	IEP	Neighborhood
BP	GO:0010014	meristem initiation	IEP	Neighborhood
BP	GO:0010015	root morphogenesis	IEP	Neighborhood
BP	GO:0010022	meristem determinacy	IEP	Neighborhood
BP	GO:0010065	primary meristem tissue development	IEP	Neighborhood
BP	GO:0010067	procambium histogenesis	IEP	Neighborhood
BP	GO:0010087	phloem or xylem histogenesis	IEP	Neighborhood
BP	GO:0010089	xylem development	IEP	Neighborhood
BP	GO:0010101	post-embryonic root morphogenesis	IEP	Neighborhood
BP	GO:0010102	lateral root morphogenesis	IEP	Neighborhood
BP	GO:0010252	auxin homeostasis	IEP	Neighborhood
MF	GO:0010279	indole-3-acetic acid amido synthetase activity	IEP	Neighborhood
MF	GO:0010329	auxin efflux transmembrane transporter activity	IEP	Neighborhood
BP	GO:0010432	bract development	IEP	Neighborhood
MF	GO:0010436	carotenoid dioxygenase activity	IEP	Neighborhood
BP	GO:0010451	floral meristem growth	IEP	Neighborhood
BP	GO:0010582	floral meristem determinacy	IEP	Neighborhood
BP	GO:0010583	response to cyclopentenone	IEP	Neighborhood
MF	GO:0015112	nitrate transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015562	efflux transmembrane transporter activity	IEP	Neighborhood
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	Neighborhood
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	Neighborhood
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Neighborhood
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	Neighborhood
MF	GO:0016881	acid-amino acid ligase activity	IEP	Neighborhood
BP	GO:0022622	root system development	IEP	Neighborhood
MF	GO:0030545	receptor regulator activity	IEP	Neighborhood
MF	GO:0030570	pectate lyase activity	IEP	Neighborhood
BP	GO:0032535	regulation of cellular component size	IEP	Neighborhood
BP	GO:0035266	meristem growth	IEP	Neighborhood
BP	GO:0042127	regulation of cell proliferation	IEP	Neighborhood
BP	GO:0043473	pigmentation	IEP	Neighborhood
BP	GO:0043476	pigment accumulation	IEP	Neighborhood
BP	GO:0043478	pigment accumulation in response to UV light	IEP	Neighborhood
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0043480	pigment accumulation in tissues	IEP	Neighborhood
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0044277	cell wall disassembly	IEP	Neighborhood
MF	GO:0045549	9-cis-epoxycarotenoid dioxygenase activity	IEP	Neighborhood
BP	GO:0045927	positive regulation of growth	IEP	Neighborhood
BP	GO:0046620	regulation of organ growth	IEP	Neighborhood
BP	GO:0046622	positive regulation of organ growth	IEP	Neighborhood
MF	GO:0048018	receptor ligand activity	IEP	Neighborhood
BP	GO:0048508	embryonic meristem development	IEP	Neighborhood
BP	GO:0048639	positive regulation of developmental growth	IEP	Neighborhood
BP	GO:0048731	system development	IEP	Neighborhood
BP	GO:0048767	root hair elongation	IEP	Neighborhood
BP	GO:0060918	auxin transport	IEP	Neighborhood
MF	GO:0080054	low-affinity nitrate transmembrane transporter activity	IEP	Neighborhood
MF	GO:0080161	auxin transmembrane transporter activity	IEP	Neighborhood
BP	GO:0090066	regulation of anatomical structure size	IEP	Neighborhood
BP	GO:0090506	axillary shoot meristem initiation	IEP	Neighborhood
BP	GO:1905392	plant organ morphogenesis	IEP	Neighborhood
BP	GO:2000012	regulation of auxin polar transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR033389	AUX/IAA_dom	26	188

External Links

No external refs found!

AT3G15540 (MSG2, IAA19)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation