AT3G16290 (EMB2083)

Aliases : EMB2083

Description : AAA-type ATPase family protein

Gene families : OG0000346 (Archaeplastida) Phylogenetic Tree(s): OG0000346_tree ,
OG_05_0008809 (LandPlants) Phylogenetic Tree(s): OG_05_0008809_tree ,
OG_06_0010609 (SeedPlants) Phylogenetic Tree(s): OG_06_0010609_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G16290
Cluster	HCCA: Cluster_149

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00260320	evm_27.TU.AmTr_v1...	Probable inactive ATP-dependent zinc metalloprotease...	0.06	Archaeplastida
AMTR_s00021p00235220	evm_27.TU.AmTr_v1...	Probable inactive ATP-dependent zinc metalloprotease...	0.03	Archaeplastida
AMTR_s00056p00047160	evm_27.TU.AmTr_v1...	Probable inactive ATP-dependent zinc metalloprotease...	0.06	Archaeplastida
AMTR_s00106p00108310	evm_27.TU.AmTr_v1...	Protein degradation.peptidase families.metallopeptidase...	0.03	Archaeplastida
Cpa\|evm.model.tig00021127.121	No alias	ATP-dependent zinc metalloprotease FTSH 5, chloroplastic...	0.02	Archaeplastida
GSVIVT01019239001	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.1	Archaeplastida
GSVIVT01036484001	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.08	Archaeplastida
Gb_28961	No alias	component FtsHi of protein translocation ATPase motor complex	0.07	Archaeplastida
Gb_32360	No alias	component FtsHi of protein translocation ATPase motor complex	0.03	Archaeplastida
LOC_Os04g39190.1	No alias	component FtsHi of protein translocation ATPase motor complex	0.06	Archaeplastida
MA_10435856g0010	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.06	Archaeplastida
MA_188257g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_793260g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_98203g0010	No alias	No annotation	0.02	Archaeplastida
Mp6g01370.1	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.05	Archaeplastida
Mp6g15080.1	No alias	component FtsHi of protein translocation ATPase motor complex	0.03	Archaeplastida
Pp3c17_20370V3.1	No alias	AAA-type ATPase family protein	0.11	Archaeplastida
Pp3c19_2770V3.1	No alias	FtsH extracellular protease family	0.05	Archaeplastida
Pp3c4_20860V3.1	No alias	cell division protein ftsH, putative	0.03	Archaeplastida
Smo152929	No alias	Protein degradation.peptidase families.metallopeptidase...	0.03	Archaeplastida
Smo166773	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.02	Archaeplastida
Smo98591	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.02	Archaeplastida
Solyc03g046340.3.1	No alias	component FtsHi of protein translocation ATPase motor complex	0.06	Archaeplastida
Solyc08g082530.4.1	No alias	Probable inactive ATP-dependent zinc metalloprotease...	0.04	Archaeplastida
Solyc12g044400.3.1	No alias	component FtsHi of protein translocation ATPase motor complex	0.06	Archaeplastida
Zm00001e007868_P001	No alias	component FtsHi of protein translocation ATPase motor complex	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000023	maltose metabolic process	RCA	Interproscan
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0005982	starch metabolic process	None	Extended
BP	GO:0005984	disaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	ISS	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
BP	GO:0009311	oligosaccharide metabolic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009536	plastid	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	NAS	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010304	PSII associated light-harvesting complex II catabolic process	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	ISS	Interproscan
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
BP	GO:0019252	starch biosynthetic process	RCA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044257	cellular protein catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044434	chloroplast part	None	Extended
CC	GO:0044435	plastid part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	Neighborhood
CC	GO:0000229	cytoplasmic chromosome	IEP	Neighborhood
BP	GO:0000373	Group II intron splicing	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003727	single-stranded RNA binding	IEP	Neighborhood
MF	GO:0003729	mRNA binding	IEP	Neighborhood
MF	GO:0003924	GTPase activity	IEP	Neighborhood
MF	GO:0004161	dimethylallyltranstransferase activity	IEP	Neighborhood
MF	GO:0004311	farnesyltranstransferase activity	IEP	Neighborhood
MF	GO:0004659	prenyltransferase activity	IEP	Neighborhood
CC	GO:0005694	chromosome	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006399	tRNA metabolic process	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006790	sulfur compound metabolic process	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
BP	GO:0007017	microtubule-based process	IEP	Neighborhood
BP	GO:0007020	microtubule nucleation	IEP	Neighborhood
MF	GO:0008173	RNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008187	poly-pyrimidine tract binding	IEP	Neighborhood
MF	GO:0008266	poly(U) RNA binding	IEP	Neighborhood
CC	GO:0009295	nucleoid	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
CC	GO:0009508	plastid chromosome	IEP	Neighborhood
CC	GO:0009513	etioplast	IEP	Neighborhood
CC	GO:0009528	plastid inner membrane	IEP	Neighborhood
CC	GO:0009532	plastid stroma	IEP	Neighborhood
CC	GO:0009570	chloroplast stroma	IEP	Neighborhood
BP	GO:0009657	plastid organization	IEP	Neighborhood
BP	GO:0009658	chloroplast organization	IEP	Neighborhood
BP	GO:0009668	plastid membrane organization	IEP	Neighborhood
CC	GO:0009706	chloroplast inner membrane	IEP	Neighborhood
BP	GO:0009742	brassinosteroid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009893	positive regulation of metabolic process	IEP	Neighborhood
BP	GO:0009902	chloroplast relocation	IEP	Neighborhood
CC	GO:0010006	Toc complex	IEP	Neighborhood
BP	GO:0010020	chloroplast fission	IEP	Neighborhood
BP	GO:0010027	thylakoid membrane organization	IEP	Neighborhood
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	Neighborhood
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	Neighborhood
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010628	positive regulation of gene expression	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Neighborhood
BP	GO:0016556	mRNA modification	IEP	Neighborhood
BP	GO:0019750	chloroplast localization	IEP	Neighborhood
BP	GO:0022607	cellular component assembly	IEP	Neighborhood
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Neighborhood
CC	GO:0031300	intrinsic component of organelle membrane	IEP	Neighborhood
CC	GO:0031301	integral component of organelle membrane	IEP	Neighborhood
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Neighborhood
CC	GO:0031350	intrinsic component of plastid membrane	IEP	Neighborhood
CC	GO:0031351	integral component of plastid membrane	IEP	Neighborhood
CC	GO:0031354	intrinsic component of plastid outer membrane	IEP	Neighborhood
CC	GO:0031355	integral component of plastid outer membrane	IEP	Neighborhood
CC	GO:0031358	intrinsic component of chloroplast outer membrane	IEP	Neighborhood
CC	GO:0031359	integral component of chloroplast outer membrane	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0042793	plastid transcription	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043401	steroid hormone mediated signaling pathway	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0043572	plastid fission	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0045036	protein targeting to chloroplast	IEP	Neighborhood
BP	GO:0045037	protein import into chloroplast stroma	IEP	Neighborhood
BP	GO:0045893	positive regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0048316	seed development	IEP	Neighborhood
BP	GO:0048481	plant ovule development	IEP	Neighborhood
BP	GO:0048522	positive regulation of cellular process	IEP	Neighborhood
BP	GO:0048598	embryonic morphogenesis	IEP	Neighborhood
BP	GO:0048608	reproductive structure development	IEP	Neighborhood
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0051640	organelle localization	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051644	plastid localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
BP	GO:0051656	establishment of organelle localization	IEP	Neighborhood
BP	GO:0051667	establishment of plastid localization	IEP	Neighborhood
BP	GO:0061024	membrane organization	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	Neighborhood
BP	GO:0072598	protein localization to chloroplast	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:0099402	plant organ development	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Neighborhood
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	446	578
IPR000642	Peptidase_M41	665	832

External Links

No external refs found!

AT3G16290 (EMB2083)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation