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  5. Zm00001e010869_P001

Zm00001e010869_P001


Description : component SYF1/MAC9 of non-snRNP MOS4-associated complex


Gene families : OG0005297 (Archaeplastida) Phylogenetic Tree(s): OG0005297_tree ,
OG_05_0005927 (LandPlants) Phylogenetic Tree(s): OG_05_0005927_tree ,
OG_06_0004761 (SeedPlants) Phylogenetic Tree(s): OG_06_0004761_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e010869_P001
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00243220 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
AMTR_s00060p00216060 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
AT5G28740 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Cpa|evm.model.tig00001206.15 No alias RNA processing.RNA splicing.spliceosome-associated... 0.01 Archaeplastida
Cre12.g513500 No alias RNA processing.RNA splicing.spliceosome-associated... 0.06 Archaeplastida
GSVIVT01006714001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.04 Archaeplastida
Gb_19093 No alias component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.05 Archaeplastida
LOC_Os07g44970.1 No alias component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.11 Archaeplastida
MA_10437082g0020 No alias component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.02 Archaeplastida
Mp4g15330.1 No alias component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.05 Archaeplastida
Pp3c1_10210V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
Smo79566 No alias RNA processing.RNA splicing.spliceosome-associated... 0.06 Archaeplastida
Solyc01g086990.3.1 No alias component SYF1/MAC9 of non-snRNP MOS4-associated complex 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 276 298
No external refs found!