AT3G16500 (PAP1, IAA26)

Aliases : PAP1, IAA26

Description : phytochrome-associated protein 1

Gene families : OG0000129 (Archaeplastida) Phylogenetic Tree(s): OG0000129_tree ,
OG_05_0000051 (LandPlants) Phylogenetic Tree(s): OG_05_0000051_tree ,
OG_06_0002617 (SeedPlants) Phylogenetic Tree(s): OG_06_0002617_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G16500
Cluster	HCCA: Cluster_148

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00266760	evm_27.TU.AmTr_v1...	Auxin-responsive protein IAA16 OS=Arabidopsis thaliana	0.03	Archaeplastida
AT1G52830	SHY1, IAA6	indole-3-acetic acid 6	0.07	Archaeplastida
AT2G22670	IAA8	indoleacetic acid-induced protein 8	0.04	Archaeplastida
AT3G15540	MSG2, IAA19	indole-3-acetic acid inducible 19	0.05	Archaeplastida
AT3G62100	IAA30	indole-3-acetic acid inducible 30	0.03	Archaeplastida
GSVIVT01000720001	No alias	Auxin-induced protein 22D OS=Vigna radiata var. radiata	0.03	Archaeplastida
GSVIVT01015350001	No alias	Auxin-responsive protein IAA27 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01016972001	No alias	Phytohormones.auxin.perception and signal...	0.05	Archaeplastida
GSVIVT01017046001	No alias	Auxin-responsive protein IAA27 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01022048001	No alias	Auxin-responsive protein IAA8 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01028242001	No alias	Auxin-responsive protein IAA4 OS=Oryza sativa subsp. indica	0.03	Archaeplastida
GSVIVT01035295001	No alias	Phytohormones.auxin.perception and signal...	0.03	Archaeplastida
GSVIVT01036283001	No alias	Auxin-induced protein AUX28 OS=Glycine max	0.03	Archaeplastida
Gb_36672	No alias	Auxin-responsive protein IAA9 OS=Arabidopsis thaliana...	0.03	Archaeplastida
LOC_Os01g08320.1	No alias	Auxin-responsive protein IAA1 OS=Oryza sativa subsp....	0.04	Archaeplastida
LOC_Os01g13030.1	No alias	Auxin-responsive protein IAA3 OS=Oryza sativa subsp....	0.03	Archaeplastida
LOC_Os02g13520.1	No alias	repressor component Aux/IAA of auxin receptor complex	0.06	Archaeplastida
LOC_Os03g43400.1	No alias	Auxin-responsive protein IAA11 OS=Oryza sativa subsp....	0.04	Archaeplastida
LOC_Os03g43410.1	No alias	Auxin-responsive protein IAA12 OS=Oryza sativa subsp....	0.03	Archaeplastida
LOC_Os03g58350.1	No alias	Auxin-responsive protein IAA14 OS=Oryza sativa subsp....	0.03	Archaeplastida
LOC_Os06g07040.1	No alias	Auxin-responsive protein IAA20 OS=Oryza sativa subsp....	0.04	Archaeplastida
LOC_Os06g22870.1	No alias	Auxin-responsive protein IAA21 OS=Oryza sativa subsp....	0.03	Archaeplastida
LOC_Os06g39590.1	No alias	Auxin-responsive protein IAA23 OS=Oryza sativa subsp....	0.04	Archaeplastida
LOC_Os09g35870.1	No alias	Auxin-responsive protein IAA26 OS=Oryza sativa subsp....	0.02	Archaeplastida
LOC_Os12g40890.1	No alias	Auxin-responsive protein IAA30 OS=Oryza sativa subsp....	0.03	Archaeplastida
LOC_Os12g40900.1	No alias	Auxin-responsive protein IAA31 OS=Oryza sativa subsp....	0.05	Archaeplastida
MA_10429925g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_10431093g0030	No alias	Auxin-responsive protein IAA30 OS=Oryza sativa subsp....	0.02	Archaeplastida
MA_123046g0010	No alias	repressor component Aux/IAA of auxin receptor complex	0.02	Archaeplastida
MA_84793g0010	No alias	Auxin-responsive protein IAA13 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Mp6g05000.1	No alias	Auxin-responsive protein IAA17 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Smo85035	No alias	Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica	0.03	Archaeplastida
Solyc03g120500.4.1	No alias	Auxin-responsive protein IAA27 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc03g121060.4.1	No alias	repressor component Aux/IAA of auxin receptor complex	0.03	Archaeplastida
Solyc06g053830.3.1	No alias	Auxin-responsive protein IAA16 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc06g084070.3.1	No alias	Auxin-responsive protein IAA4 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc09g064530.3.1	No alias	Auxin-responsive protein IAA13 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc12g007230.2.1	No alias	Auxin-responsive protein IAA27 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc12g096980.3.1	No alias	Auxin-responsive protein IAA12 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Zm00001e003178_P003	No alias	Auxin-responsive protein IAA31 OS=Oryza sativa subsp....	0.02	Archaeplastida
Zm00001e005073_P001	No alias	Auxin-responsive protein IAA12 OS=Oryza sativa subsp....	0.03	Archaeplastida
Zm00001e011863_P002	No alias	Auxin-responsive protein IAA24 OS=Oryza sativa subsp....	0.03	Archaeplastida
Zm00001e012059_P002	No alias	Auxin-responsive protein IAA13 OS=Oryza sativa subsp....	0.03	Archaeplastida
Zm00001e012423_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e017434_P002	No alias	Auxin-responsive protein IAA4 OS=Oryza sativa subsp....	0.06	Archaeplastida
Zm00001e018053_P002	No alias	Auxin-responsive protein IAA30 OS=Oryza sativa subsp....	0.03	Archaeplastida
Zm00001e023600_P003	No alias	Auxin-responsive protein IAA10 OS=Oryza sativa subsp....	0.04	Archaeplastida
Zm00001e030609_P002	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e032955_P001	No alias	Auxin-responsive protein IAA24 OS=Oryza sativa subsp....	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006995	cellular response to nitrogen starvation	RCA	Interproscan
BP	GO:0007154	cell communication	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009267	cellular response to starvation	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	TAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0031667	response to nutrient levels	None	Extended
BP	GO:0031668	cellular response to extracellular stimulus	None	Extended
BP	GO:0031669	cellular response to nutrient levels	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042594	response to starvation	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043562	cellular response to nitrogen levels	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071496	cellular response to external stimulus	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0001763	morphogenesis of a branching structure	IEP	Neighborhood
BP	GO:0003002	regionalization	IEP	Neighborhood
BP	GO:0003006	developmental process involved in reproduction	IEP	Neighborhood
MF	GO:0004707	MAP kinase activity	IEP	Neighborhood
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Neighborhood
MF	GO:0004722	protein serine/threonine phosphatase activity	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006644	phospholipid metabolic process	IEP	Neighborhood
BP	GO:0006650	glycerophospholipid metabolic process	IEP	Neighborhood
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Neighborhood
BP	GO:0007389	pattern specification process	IEP	Neighborhood
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
BP	GO:0008654	phospholipid biosynthetic process	IEP	Neighborhood
BP	GO:0009653	anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0009799	specification of symmetry	IEP	Neighborhood
BP	GO:0009812	flavonoid metabolic process	IEP	Neighborhood
BP	GO:0009813	flavonoid biosynthetic process	IEP	Neighborhood
BP	GO:0009855	determination of bilateral symmetry	IEP	Neighborhood
BP	GO:0009886	post-embryonic animal morphogenesis	IEP	Neighborhood
BP	GO:0009887	animal organ morphogenesis	IEP	Neighborhood
BP	GO:0009888	tissue development	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	Neighborhood
BP	GO:0010014	meristem initiation	IEP	Neighborhood
BP	GO:0010016	shoot system morphogenesis	IEP	Neighborhood
BP	GO:0010051	xylem and phloem pattern formation	IEP	Neighborhood
BP	GO:0010065	primary meristem tissue development	IEP	Neighborhood
BP	GO:0010067	procambium histogenesis	IEP	Neighborhood
BP	GO:0010074	maintenance of meristem identity	IEP	Neighborhood
BP	GO:0010076	maintenance of floral meristem identity	IEP	Neighborhood
BP	GO:0010077	maintenance of inflorescence meristem identity	IEP	Neighborhood
BP	GO:0010087	phloem or xylem histogenesis	IEP	Neighborhood
BP	GO:0010089	xylem development	IEP	Neighborhood
BP	GO:0010223	secondary shoot formation	IEP	Neighborhood
BP	GO:0010229	inflorescence development	IEP	Neighborhood
BP	GO:0010346	shoot axis formation	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
MF	GO:0010487	thermospermine synthase activity	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Neighborhood
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Neighborhood
MF	GO:0016657	oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor	IEP	Neighborhood
MF	GO:0016768	spermine synthase activity	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019827	stem cell population maintenance	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
MF	GO:0045431	flavonol synthase activity	IEP	Neighborhood
BP	GO:0046292	formaldehyde metabolic process	IEP	Neighborhood
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	Neighborhood
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	Neighborhood
BP	GO:0048367	shoot system development	IEP	Neighborhood
BP	GO:0048438	floral whorl development	IEP	Neighborhood
BP	GO:0048439	flower morphogenesis	IEP	Neighborhood
BP	GO:0048457	floral whorl morphogenesis	IEP	Neighborhood
BP	GO:0048507	meristem development	IEP	Neighborhood
BP	GO:0048508	embryonic meristem development	IEP	Neighborhood
BP	GO:0048513	animal organ development	IEP	Neighborhood
BP	GO:0048608	reproductive structure development	IEP	Neighborhood
BP	GO:0048645	animal organ formation	IEP	Neighborhood
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	Neighborhood
BP	GO:0048731	system development	IEP	Neighborhood
BP	GO:0048759	xylem vessel member cell differentiation	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
MF	GO:0051903	S-(hydroxymethyl)glutathione dehydrogenase activity	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0065001	specification of axis polarity	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0080006	internode patterning	IEP	Neighborhood
MF	GO:0080007	S-nitrosoglutathione reductase activity	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
BP	GO:0090506	axillary shoot meristem initiation	IEP	Neighborhood
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	Neighborhood
BP	GO:0098727	maintenance of cell number	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
BP	GO:1903338	regulation of cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:1905177	tracheary element differentiation	IEP	Neighborhood
BP	GO:1905393	plant organ formation	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2000652	regulation of secondary cell wall biogenesis	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR033389	AUX/IAA_dom	38	254

External Links

No external refs found!

AT3G16500 (PAP1, IAA26)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation