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  5. AT1G13190

AT1G13190


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG0003114 (Archaeplastida) Phylogenetic Tree(s): OG0003114_tree ,
OG_05_0002720 (LandPlants) Phylogenetic Tree(s): OG_05_0002720_tree ,
OG_06_0002572 (SeedPlants) Phylogenetic Tree(s): OG_06_0002572_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G13190
Cluster HCCA: Cluster_238

Target Alias Description ECC score Gene Family Method Actions
Cre08.g384950 No alias No description available 0.02 Archaeplastida
LOC_Os08g38240.1 No alias component CPFS6/CFIm68 of Cleavage Factor I (CF-Im) complex 0.02 Archaeplastida
MA_10096503g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_202067g0010 No alias component CPFS6/CFIm68 of Cleavage Factor I (CF-Im) complex 0.05 Archaeplastida
Mp3g08890.1 No alias component CPFS6/CFIm68 of Cleavage Factor I (CF-Im) complex 0.03 Archaeplastida
Solyc07g065510.4.1 No alias component CPFS6/CFIm68 of Cleavage Factor I (CF-Im) complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0001664 G-protein coupled receptor binding IEP Neighborhood
MF GO:0003727 single-stranded RNA binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
MF GO:0005102 signaling receptor binding IEP Neighborhood
CC GO:0005778 peroxisomal membrane IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006301 postreplication repair IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0007187 G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger IEP Neighborhood
BP GO:0007188 adenylate cyclase-modulating G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0008284 positive regulation of cell proliferation IEP Neighborhood
MF GO:0008327 methyl-CpG binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009629 response to gravity IEP Neighborhood
BP GO:0009630 gravitropism IEP Neighborhood
BP GO:0010351 lithium ion transport IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010555 response to mannitol IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0019897 extrinsic component of plasma membrane IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
CC GO:0031234 extrinsic component of cytoplasmic side of plasma membrane IEP Neighborhood
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Neighborhood
CC GO:0031903 microbody membrane IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042127 regulation of cell proliferation IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044438 microbody part IEP Neighborhood
CC GO:0044439 peroxisomal part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1905421 regulation of plant organ morphogenesis IEP Neighborhood
BP GO:2000067 regulation of root morphogenesis IEP Neighborhood
BP GO:2000280 regulation of root development IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 204 272
No external refs found!