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  5. Zm00001e011267_P001

Zm00001e011267_P001


Description : Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica (sp|q76c99|rf1_orysi : 389.0)


Gene families : OG0001482 (Archaeplastida) Phylogenetic Tree(s): OG0001482_tree ,
OG_05_0000870 (LandPlants) Phylogenetic Tree(s): OG_05_0000870_tree ,
OG_06_0000537 (SeedPlants) Phylogenetic Tree(s): OG_06_0000537_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e011267_P001
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
LOC_Os08g01640.1 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
LOC_Os08g01650.1 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
LOC_Os08g15000.1 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
LOC_Os10g35436.1 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
LOC_Os10g35440.1 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
Smo51561 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica 0.02 Archaeplastida
Zm00001e011263_P001 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica... 0.14 Archaeplastida
Zm00001e026658_P003 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica... 0.17 Archaeplastida
Zm00001e026660_P001 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica... 0.11 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 101 123
IPR002885 Pentatricopeptide_repeat 202 251
IPR002885 Pentatricopeptide_repeat 132 181
IPR002885 Pentatricopeptide_repeat 27 76
IPR002885 Pentatricopeptide_repeat 273 319
No external refs found!