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  5. Zm00001e011429_P001

Zm00001e011429_P001


Description : small subunit of U2AF pre-RNA splicing auxiliary factor complex


Gene families : OG0001875 (Archaeplastida) Phylogenetic Tree(s): OG0001875_tree ,
OG_05_0001802 (LandPlants) Phylogenetic Tree(s): OG_05_0001802_tree ,
OG_06_0001679 (SeedPlants) Phylogenetic Tree(s): OG_06_0001679_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e011429_P001
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.61 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Cre06.g250950 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
LOC_Os05g48960.4 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Archaeplastida
MA_77509g0010 No alias Splicing factor U2af small subunit B OS=Arabidopsis... 0.03 Archaeplastida
Pp3c25_1230V3.1 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 Archaeplastida
Solyc10g083640.2.1 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.02 Archaeplastida
Zm00001e032430_P001 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 150 174
IPR000571 Znf_CCCH 14 38
IPR000504 RRM_dom 83 139
No external refs found!