Zm00001e011842_P001

Description : DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa subsp. japonica (sp|q84t03|rh27_orysj : 847.0)

Gene families : OG0000482 (Archaeplastida) Phylogenetic Tree(s): OG0000482_tree ,
OG_05_0003742 (LandPlants) Phylogenetic Tree(s): OG_05_0003742_tree ,
OG_06_0004412 (SeedPlants) Phylogenetic Tree(s): OG_06_0004412_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e011842_P001
Cluster	HCCA: Cluster_103

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00225030	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.04	Archaeplastida
AMTR_s00062p00159540	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana	0.04	Archaeplastida
AT2G40700	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.11	Archaeplastida
AT3G18600	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.18	Archaeplastida
AT5G05450	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.05	Archaeplastida
AT5G54910	No alias	DEA(D/H)-box RNA helicase family protein	0.03	Archaeplastida
AT5G65900	No alias	DEA(D/H)-box RNA helicase family protein	0.06	Archaeplastida
Cpa\|evm.model.tig00000441.11	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.03	Archaeplastida
Cpa\|evm.model.tig00000441.12	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Arabidopsis thaliana	0.01	Archaeplastida
Cpa\|evm.model.tig00000615.43	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana	0.02	Archaeplastida
Cpa\|evm.model.tig00020684.38	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa...	0.06	Archaeplastida
Cre03.g156150	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana	0.17	Archaeplastida
Cre03.g188550	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa...	0.13	Archaeplastida
Cre06.g282600	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana	0.05	Archaeplastida
Cre07.g314900	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.17	Archaeplastida
GSVIVT01008218001	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.09	Archaeplastida
GSVIVT01015034001	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana	0.06	Archaeplastida
GSVIVT01032750001	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana	0.07	Archaeplastida
GSVIVT01037636001	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana	0.08	Archaeplastida
Gb_06702	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.04	Archaeplastida
Gb_10018	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis...	0.02	Archaeplastida
Gb_12810	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa...	0.06	Archaeplastida
Gb_16157	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa...	0.06	Archaeplastida
LOC_Os01g07080.1	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa...	0.12	Archaeplastida
LOC_Os03g58810.1	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.16	Archaeplastida
LOC_Os07g33340.1	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa...	0.06	Archaeplastida
MA_10334041g0020	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis...	0.05	Archaeplastida
MA_109969g0010	No alias	DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis...	0.04	Archaeplastida
Mp5g04780.1	No alias	DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis...	0.04	Archaeplastida
Mp6g05260.1	No alias	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa...	0.12	Archaeplastida
Mp7g12890.1	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.14	Archaeplastida
Mp8g10290.1	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis...	0.14	Archaeplastida
Pp3c11_510V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	Archaeplastida
Pp3c17_13450V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.06	Archaeplastida
Pp3c1_22540V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.15	Archaeplastida
Pp3c4_14810V3.1	No alias	DEA(D/H)-box RNA helicase family protein	0.15	Archaeplastida
Smo104808	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.06	Archaeplastida
Smo230685	No alias	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa...	0.06	Archaeplastida
Solyc03g114370.4.1	No alias	no hits & (original description: none)	0.21	Archaeplastida
Solyc07g064520.3.1	No alias	DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis...	0.22	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0003924	GTPase activity	IEP	Neighborhood
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Neighborhood
MF	GO:0004252	serine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Neighborhood
MF	GO:0004832	valine-tRNA ligase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005732	small nucleolar ribonucleoprotein complex	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006334	nucleosome assembly	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006399	tRNA metabolic process	IEP	Neighborhood
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Neighborhood
BP	GO:0006438	valyl-tRNA aminoacylation	IEP	Neighborhood
BP	GO:0006520	cellular amino acid metabolic process	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016597	amino acid binding	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0016874	ligase activity	IEP	Neighborhood
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Neighborhood
MF	GO:0016887	ATPase activity	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0022607	cellular component assembly	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
CC	GO:0030684	preribosome	IEP	Neighborhood
MF	GO:0031406	carboxylic acid binding	IEP	Neighborhood
CC	GO:0032040	small-subunit processome	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
CC	GO:0034457	Mpp10 complex	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0034728	nucleosome organization	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
MF	GO:0042623	ATPase activity, coupled	IEP	Neighborhood
BP	GO:0043038	amino acid activation	IEP	Neighborhood
BP	GO:0043039	tRNA aminoacylation	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
MF	GO:0043177	organic acid binding	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0043933	protein-containing complex subunit organization	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044452	nucleolar part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0065003	protein-containing complex assembly	IEP	Neighborhood
BP	GO:0065004	protein-DNA complex assembly	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR025313	DUF4217	541	600
IPR001650	Helicase_C	392	498
IPR011545	DEAD/DEAH_box_helicase_dom	176	346

External Links

No external refs found!

Zm00001e011842_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation