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  5. Zm00001e012088_P003

Zm00001e012088_P003


Description : component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase P complex


Gene families : OG0000895 (Archaeplastida) Phylogenetic Tree(s): OG0000895_tree ,
OG_05_0000703 (LandPlants) Phylogenetic Tree(s): OG_05_0000703_tree ,
OG_06_0000624 (SeedPlants) Phylogenetic Tree(s): OG_06_0000624_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e012088_P003
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000842.55 No alias RNA processing.ribonuclease activities.RNase P... 0.02 Archaeplastida
GSVIVT01022283001 No alias RNA processing.ribonuclease activities.RNase P... 0.04 Archaeplastida
LOC_Os03g06980.1 No alias component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.09 Archaeplastida
LOC_Os03g52490.1 No alias component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.08 Archaeplastida
LOC_Os04g34940.1 No alias component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.07 Archaeplastida
LOC_Os09g37006.1 No alias component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.06 Archaeplastida
MA_130303g0010 No alias component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.04 Archaeplastida
MA_18236g0010 No alias component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.03 Archaeplastida
Solyc06g083540.4.1 No alias component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.05 Archaeplastida
Zm00001e001541_P001 No alias component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002775 DNA/RNA-bd_Alba-like 19 82
No external refs found!