AT3G17930

Description : unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3007 (InterPro:IPR021562); Has 236 Blast hits to 236 proteins in 83 species: Archae - 0; Bacteria - 117; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).

Gene families : OG0007389 (Archaeplastida) Phylogenetic Tree(s): OG0007389_tree ,
OG_05_0009288 (LandPlants) Phylogenetic Tree(s): OG_05_0009288_tree ,
OG_06_0011516 (SeedPlants) Phylogenetic Tree(s): OG_06_0011516_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G17930
Cluster	HCCA: Cluster_185

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00095p00166740	evm_27.TU.AmTr_v1...	Photosynthesis.photophosphorylation.cytochrome b6/f...	0.02	Archaeplastida
LOC_Os01g59080.1	No alias	DAC protein involved in cytochrome b6/f complex assembly	0.03	Archaeplastida
Mp2g10730.1	No alias	DAC protein involved in cytochrome b6/f complex assembly	0.04	Archaeplastida
Pp3c5_23310V3.1	No alias	No annotation	0.05	Archaeplastida
Smo406591	No alias	Photosynthesis.photophosphorylation.cytochrome b6/f...	0.04	Archaeplastida
Solyc05g006440.4.1	No alias	DAC protein involved in cytochrome b6/f complex assembly	0.05	Archaeplastida
Zm00001e019533_P001	No alias	DAC protein involved in cytochrome b6/f complex assembly	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000023	maltose metabolic process	RCA	Interproscan
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0005982	starch metabolic process	None	Extended
BP	GO:0005984	disaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0006081	cellular aldehyde metabolic process	None	Extended
BP	GO:0006098	pentose-phosphate shunt	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006732	coenzyme metabolic process	None	Extended
BP	GO:0006733	oxidoreduction coenzyme metabolic process	None	Extended
BP	GO:0006739	NADP metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
BP	GO:0009311	oligosaccharide metabolic process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009658	chloroplast organization	None	Extended
BP	GO:0009668	plastid membrane organization	None	Extended
BP	GO:0009902	chloroplast relocation	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010027	thylakoid membrane organization	RCA	Interproscan
BP	GO:0010190	cytochrome b6f complex assembly	IMP	Interproscan
BP	GO:0010207	photosystem II assembly	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0017004	cytochrome complex assembly	None	Extended
BP	GO:0019252	starch biosynthetic process	RCA	Interproscan
BP	GO:0019362	pyridine nucleotide metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0019750	chloroplast localization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	RCA	Interproscan
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0043085	positive regulation of catalytic activity	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044093	positive regulation of molecular function	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044434	chloroplast part	None	Extended
CC	GO:0044435	plastid part	None	Extended
CC	GO:0044436	thylakoid part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046496	nicotinamide nucleotide metabolic process	None	Extended
BP	GO:0050790	regulation of catalytic activity	None	Extended
BP	GO:0051156	glucose 6-phosphate metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051186	cofactor metabolic process	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051640	organelle localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051644	plastid localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051656	establishment of organelle localization	None	Extended
BP	GO:0051667	establishment of plastid localization	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0061024	membrane organization	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072524	pyridine-containing compound metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000229	cytoplasmic chromosome	IEP	Neighborhood
MF	GO:0004148	dihydrolipoyl dehydrogenase activity	IEP	Neighborhood
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Neighborhood
CC	GO:0005694	chromosome	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
BP	GO:0006090	pyruvate metabolic process	IEP	Neighborhood
BP	GO:0006109	regulation of carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006644	phospholipid metabolic process	IEP	Neighborhood
BP	GO:0006879	cellular iron ion homeostasis	IEP	Neighborhood
BP	GO:0006897	endocytosis	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
BP	GO:0008610	lipid biosynthetic process	IEP	Neighborhood
BP	GO:0008654	phospholipid biosynthetic process	IEP	Neighborhood
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	IEP	Neighborhood
CC	GO:0009368	endopeptidase Clp complex	IEP	Neighborhood
BP	GO:0009408	response to heat	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
CC	GO:0009508	plastid chromosome	IEP	Neighborhood
CC	GO:0009526	plastid envelope	IEP	Neighborhood
CC	GO:0009532	plastid stroma	IEP	Neighborhood
CC	GO:0009534	chloroplast thylakoid	IEP	Neighborhood
CC	GO:0009570	chloroplast stroma	IEP	Neighborhood
CC	GO:0009579	thylakoid	IEP	Neighborhood
BP	GO:0009637	response to blue light	IEP	Neighborhood
BP	GO:0009653	anatomical structure morphogenesis	IEP	Neighborhood
CC	GO:0009840	chloroplastic endopeptidase Clp complex	IEP	Neighborhood
CC	GO:0009941	chloroplast envelope	IEP	Neighborhood
BP	GO:0009965	leaf morphogenesis	IEP	Neighborhood
BP	GO:0010109	regulation of photosynthesis	IEP	Neighborhood
BP	GO:0010110	regulation of photosynthesis, dark reaction	IEP	Neighborhood
BP	GO:0010155	regulation of proton transport	IEP	Neighborhood
BP	GO:0010206	photosystem II repair	IEP	Neighborhood
BP	GO:0010257	NADH dehydrogenase complex assembly	IEP	Neighborhood
BP	GO:0010258	NADH dehydrogenase complex (plastoquinone) assembly	IEP	Neighborhood
BP	GO:0010304	PSII associated light-harvesting complex II catabolic process	IEP	Neighborhood
CC	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
BP	GO:0016556	mRNA modification	IEP	Neighborhood
MF	GO:0016668	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	IEP	Neighborhood
BP	GO:0018149	peptide cross-linking	IEP	Neighborhood
BP	GO:0018198	peptidyl-cysteine modification	IEP	Neighborhood
BP	GO:0018316	peptide cross-linking via L-cystine	IEP	Neighborhood
BP	GO:0019253	reductive pentose-phosphate cycle	IEP	Neighborhood
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	Neighborhood
BP	GO:0019685	photosynthesis, dark reaction	IEP	Neighborhood
BP	GO:0019725	cellular homeostasis	IEP	Neighborhood
BP	GO:0030091	protein repair	IEP	Neighborhood
BP	GO:0030154	cell differentiation	IEP	Neighborhood
CC	GO:0031967	organelle envelope	IEP	Neighborhood
CC	GO:0031975	envelope	IEP	Neighborhood
CC	GO:0031976	plastid thylakoid	IEP	Neighborhood
CC	GO:0031977	thylakoid lumen	IEP	Neighborhood
CC	GO:0031984	organelle subcompartment	IEP	Neighborhood
BP	GO:0032879	regulation of localization	IEP	Neighborhood
BP	GO:0034059	response to anoxia	IEP	Neighborhood
BP	GO:0034605	cellular response to heat	IEP	Neighborhood
BP	GO:0034762	regulation of transmembrane transport	IEP	Neighborhood
BP	GO:0034765	regulation of ion transmembrane transport	IEP	Neighborhood
BP	GO:0036294	cellular response to decreased oxygen levels	IEP	Neighborhood
MF	GO:0042623	ATPase activity, coupled	IEP	Neighborhood
BP	GO:0043255	regulation of carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0043269	regulation of ion transport	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0044255	cellular lipid metabolic process	IEP	Neighborhood
BP	GO:0044257	cellular protein catabolic process	IEP	Neighborhood
BP	GO:0045454	cell redox homeostasis	IEP	Neighborhood
BP	GO:0045912	negative regulation of carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0046490	isopentenyl diphosphate metabolic process	IEP	Neighborhood
BP	GO:0046777	protein autophosphorylation	IEP	Neighborhood
BP	GO:0046916	cellular transition metal ion homeostasis	IEP	Neighborhood
BP	GO:0048564	photosystem I assembly	IEP	Neighborhood
MF	GO:0050897	cobalt ion binding	IEP	Neighborhood
BP	GO:0051049	regulation of transport	IEP	Neighborhood
BP	GO:0055072	iron ion homeostasis	IEP	Neighborhood
BP	GO:0070417	cellular response to cold	IEP	Neighborhood
BP	GO:0071453	cellular response to oxygen levels	IEP	Neighborhood
BP	GO:0071454	cellular response to anoxia	IEP	Neighborhood
BP	GO:0080152	regulation of reductive pentose-phosphate cycle	IEP	Neighborhood
BP	GO:0080153	negative regulation of reductive pentose-phosphate cycle	IEP	Neighborhood
BP	GO:0080183	response to photooxidative stress	IEP	Neighborhood
BP	GO:0090407	organophosphate biosynthetic process	IEP	Neighborhood
BP	GO:0098657	import into cell	IEP	Neighborhood
BP	GO:1904062	regulation of cation transmembrane transport	IEP	Neighborhood
BP	GO:1905156	negative regulation of photosynthesis	IEP	Neighborhood
BP	GO:1905392	plant organ morphogenesis	IEP	Neighborhood
BP	GO:2000030	regulation of response to red or far red light	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR021562	DUF3007	88	183

External Links

No external refs found!

AT3G17930

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation