Zm00001e013023_P001

Description : ligand-gated cation channel (GLR)

Gene families : OG0000085 (Archaeplastida) Phylogenetic Tree(s): OG0000085_tree ,
OG_05_0000436 (LandPlants) Phylogenetic Tree(s): OG_05_0000436_tree ,
OG_06_0000332 (SeedPlants) Phylogenetic Tree(s): OG_06_0000332_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e013023_P001
Cluster	HCCA: Cluster_2

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00178550	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.02	Archaeplastida
AMTR_s00019p00182440	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.05	Archaeplastida
AMTR_s00019p00182630	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.06	Archaeplastida
AMTR_s00021p00172130	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.03	Archaeplastida
AMTR_s00062p00055860	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.02	Archaeplastida
AT2G29120	GLR2.7, ATGLR2.7	glutamate receptor 2.7	0.04	Archaeplastida
AT3G04110	ATGLR1.1, GLR1.1, GLR1	glutamate receptor 1.1	0.03	Archaeplastida
AT5G11180	ATGLR2.6, GLR2.6	glutamate receptor 2.6	0.03	Archaeplastida
AT5G27100	GLR2.1, ATGLR2.1	glutamate receptor 2.1	0.04	Archaeplastida
AT5G48410	ATGLR1.3, GLR1.3	glutamate receptor 1.3	0.02	Archaeplastida
GSVIVT01014244001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.04	Archaeplastida
GSVIVT01030602001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.03	Archaeplastida
GSVIVT01033163001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.03	Archaeplastida
Gb_20613	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
Gb_28362	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
Gb_28364	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
Gb_39753	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
LOC_Os02g54640.1	No alias	ligand-gated cation channel (GLR)	0.07	Archaeplastida
LOC_Os06g09090.1	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
MA_10430853g0010	No alias	ligand-gated cation channel (GLR)	0.01	Archaeplastida
MA_32301g0010	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
MA_46902g0010	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
MA_958834g0010	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
Solyc04g078860.4.1	No alias	ligand-gated cation channel (GLR)	0.04	Archaeplastida
Solyc06g063180.3.1	No alias	ligand-gated cation channel (GLR)	0.04	Archaeplastida
Solyc06g063190.3.1	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
Solyc06g063200.2.1	No alias	ligand-gated cation channel (GLR)	0.04	Archaeplastida
Solyc06g063210.3.1	No alias	ligand-gated cation channel (GLR)	0.06	Archaeplastida
Solyc07g052400.3.1	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
Solyc08g006500.4.1	No alias	ligand-gated cation channel (GLR)	0.04	Archaeplastida
Zm00001e009847_P001	No alias	ligand-gated cation channel (GLR)	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated ion channel activity	IEA	Interproscan
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022839	ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0001871	pattern binding	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0003873	6-phosphofructo-2-kinase activity	IEP	Neighborhood
MF	GO:0003951	NAD+ kinase activity	IEP	Neighborhood
MF	GO:0004061	arylformamidase activity	IEP	Neighborhood
MF	GO:0004144	diacylglycerol O-acyltransferase activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0005381	iron ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
BP	GO:0006000	fructose metabolic process	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006568	tryptophan metabolic process	IEP	Neighborhood
BP	GO:0006569	tryptophan catabolic process	IEP	Neighborhood
BP	GO:0006586	indolalkylamine metabolic process	IEP	Neighborhood
BP	GO:0006739	NADP metabolic process	IEP	Neighborhood
BP	GO:0006741	NADP biosynthetic process	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0006826	iron ion transport	IEP	Neighborhood
BP	GO:0007165	signal transduction	IEP	Neighborhood
BP	GO:0008037	cell recognition	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
BP	GO:0008150	biological_process	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0008374	O-acyltransferase activity	IEP	Neighborhood
MF	GO:0008443	phosphofructokinase activity	IEP	Neighborhood
BP	GO:0009063	cellular amino acid catabolic process	IEP	Neighborhood
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	Neighborhood
BP	GO:0009310	amine catabolic process	IEP	Neighborhood
MF	GO:0009916	alternative oxidase activity	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
BP	GO:0016054	organic acid catabolic process	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016411	acylglycerol O-acyltransferase activity	IEP	Neighborhood
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Neighborhood
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Neighborhood
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
MF	GO:0019200	carbohydrate kinase activity	IEP	Neighborhood
BP	GO:0019318	hexose metabolic process	IEP	Neighborhood
BP	GO:0019441	tryptophan catabolic process to kynurenine	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
MF	GO:0030246	carbohydrate binding	IEP	Neighborhood
MF	GO:0030247	polysaccharide binding	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0034220	ion transmembrane transport	IEP	Neighborhood
BP	GO:0034755	iron ion transmembrane transport	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0042180	cellular ketone metabolic process	IEP	Neighborhood
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	Neighborhood
BP	GO:0042430	indole-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042436	indole-containing compound catabolic process	IEP	Neighborhood
BP	GO:0042537	benzene-containing compound metabolic process	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
MF	GO:0043531	ADP binding	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044255	cellular lipid metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
BP	GO:0044282	small molecule catabolic process	IEP	Neighborhood
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Neighborhood
BP	GO:0046218	indolalkylamine catabolic process	IEP	Neighborhood
BP	GO:0046395	carboxylic acid catabolic process	IEP	Neighborhood
BP	GO:0046486	glycerolipid metabolic process	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0048544	recognition of pollen	IEP	Neighborhood
BP	GO:0070189	kynurenine metabolic process	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
MF	GO:0071949	FAD binding	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
BP	GO:0098655	cation transmembrane transport	IEP	Neighborhood
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Neighborhood
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood
BP	GO:1901606	alpha-amino acid catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001320	Iontro_rcpt	812	841
IPR001828	ANF_lig-bd_rcpt	50	410
IPR001638	Solute-binding_3/MltF_N	493	811

External Links

No external refs found!

Zm00001e013023_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation