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  5. AT3G19090

AT3G19090


Description : RNA-binding protein


Gene families : OG0001518 (Archaeplastida) Phylogenetic Tree(s): OG0001518_tree ,
OG_05_0001117 (LandPlants) Phylogenetic Tree(s): OG_05_0001117_tree ,
OG_06_0000812 (SeedPlants) Phylogenetic Tree(s): OG_06_0000812_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G19090
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
LOC_Os07g01260.1 No alias La-related protein 6C OS=Arabidopsis thaliana... 0.06 Archaeplastida
Pp3c2_11250V3.1 No alias RNA-binding protein 0.03 Archaeplastida
Solyc01g108310.4.1 No alias La-related protein 6C OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc02g070550.3.1 No alias La-related protein 6A OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc10g050550.3.1 No alias La-related protein 6C OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc12g096640.3.1 No alias La-related protein 6B OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e004312_P002 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e032645_P001 No alias La-related protein 6C OS=Arabidopsis thaliana... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000902 cell morphogenesis IEP Neighborhood
BP GO:0000904 cell morphogenesis involved in differentiation IEP Neighborhood
MF GO:0004467 long-chain fatty acid-CoA ligase activity IEP Neighborhood
MF GO:0004470 malic enzyme activity IEP Neighborhood
MF GO:0004473 malate dehydrogenase (decarboxylating) (NADP+) activity IEP Neighborhood
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0005092 GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005093 Rab GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
BP GO:0006108 malate metabolic process IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0008553 proton-exporting ATPase activity, phosphorylative mechanism IEP Neighborhood
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Neighborhood
BP GO:0009653 anatomical structure morphogenesis IEP Neighborhood
BP GO:0009664 plant-type cell wall organization IEP Neighborhood
MF GO:0009672 auxin:proton symporter activity IEP Neighborhood
BP GO:0009826 unidimensional cell growth IEP Neighborhood
BP GO:0009827 plant-type cell wall modification IEP Neighborhood
BP GO:0009860 pollen tube growth IEP Neighborhood
BP GO:0009932 cell tip growth IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015204 urea transmembrane transporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
MF GO:0015645 fatty acid ligase activity IEP Neighborhood
MF GO:0015662 ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism IEP Neighborhood
BP GO:0015840 urea transport IEP Neighborhood
MF GO:0016004 phospholipase activator activity IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
MF GO:0016652 oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor IEP Neighborhood
BP GO:0019755 one-carbon compound transport IEP Neighborhood
MF GO:0019829 cation-transporting ATPase activity IEP Neighborhood
MF GO:0022853 active ion transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
CC GO:0030427 site of polarized growth IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
BP GO:0032989 cellular component morphogenesis IEP Neighborhood
CC GO:0035838 growing cell tip IEP Neighborhood
MF GO:0036442 proton-exporting ATPase activity IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Neighborhood
MF GO:0042887 amide transmembrane transporter activity IEP Neighborhood
CC GO:0044463 cell projection part IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0045309 protein phosphorylated amino acid binding IEP Neighborhood
MF GO:0046910 pectinesterase inhibitor activity IEP Neighborhood
BP GO:0048588 developmental cell growth IEP Neighborhood
BP GO:0048589 developmental growth IEP Neighborhood
BP GO:0050829 defense response to Gram-negative bacterium IEP Neighborhood
MF GO:0051219 phosphoprotein binding IEP Neighborhood
BP GO:0051260 protein homooligomerization IEP Neighborhood
CC GO:0051286 cell tip IEP Neighborhood
MF GO:0060229 lipase activator activity IEP Neighborhood
BP GO:0060560 developmental growth involved in morphogenesis IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Neighborhood
CC GO:0090404 pollen tube tip IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
CC GO:0120038 plasma membrane bounded cell projection part IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 241 309
IPR009818 Ataxin-2_C 33 47
IPR006630 La_HTH 148 205
No external refs found!