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Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 167.0)
Gene families : OG0000233 (Archaeplastida) Phylogenetic Tree(s): OG0000233_tree ,
OG_05_0001171 (LandPlants) Phylogenetic Tree(s): OG_05_0001171_tree ,
OG_06_0001131 (SeedPlants) Phylogenetic Tree(s): OG_06_0001131_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e014461_P003 | |
| Cluster | HCCA: Cluster_6 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00049p00200350 | evm_27.TU.AmTr_v1... | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana | 0.05 | Archaeplastida | |
| AMTR_s00065p00083440 | evm_27.TU.AmTr_v1... | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana | 0.07 | Archaeplastida | |
| AMTR_s00067p00185510 | evm_27.TU.AmTr_v1... | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana | 0.08 | Archaeplastida | |
| GSVIVT01016872001 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
| GSVIVT01028394001 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana | 0.04 | Archaeplastida | |
| GSVIVT01037771001 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
| Gb_29426 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.03 | Archaeplastida | |
| Gb_33485 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.06 | Archaeplastida | |
| Gb_35079 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.06 | Archaeplastida | |
| LOC_Os02g12850.1 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.12 | Archaeplastida | |
| LOC_Os10g33230.1 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.19 | Archaeplastida | |
| MA_10432683g0010 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.04 | Archaeplastida | |
| MA_125759g0010 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.06 | Archaeplastida | |
| MA_141102g0010 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.02 | Archaeplastida | |
| MA_473g0010 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.05 | Archaeplastida | |
| Mp1g27850.1 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.03 | Archaeplastida | |
| Pp3c26_4470V3.1 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.02 | Archaeplastida | |
| Pp3c2_9200V3.1 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.02 | Archaeplastida | |
| Pp3c4_17440V3.1 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.02 | Archaeplastida | |
| Smo101375 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
| Smo172407 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana | 0.02 | Archaeplastida | |
| Solyc02g093340.3.1 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.04 | Archaeplastida | |
| Solyc03g005680.3.1 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.05 | Archaeplastida | |
| Solyc03g121710.2.1 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.05 | Archaeplastida | |
| Solyc07g045240.3.1 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.06 | Archaeplastida | |
| Solyc09g090520.3.1 | No alias | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... | 0.05 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| CC | GO:0005681 | spliceosomal complex | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| MF | GO:0008144 | drug binding | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| No external refs found! |