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  5. Zm00001e014825_P001

Zm00001e014825_P001


Description : Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana (sp|q9zuw3|pp172_arath : 760.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e014825_P001
Cluster HCCA: Cluster_267

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00266930 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
AMTR_s00045p00048330 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g53360,... 0.02 Archaeplastida
AMTR_s00062p00213230 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
AMTR_s00092p00078040 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.02 Archaeplastida
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
AT1G22830 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT1G26900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT2G04860 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G49170 EMB2261 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT4G14850 LOI1, MEF11 Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT5G13270 RARE1 Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT5G65570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
GSVIVT01036393001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.03 Archaeplastida
Gb_38938 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
LOC_Os01g27650.1 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
LOC_Os02g18810.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os03g32620.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
LOC_Os03g60690.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.02 Archaeplastida
LOC_Os04g14450.1 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.03 Archaeplastida
LOC_Os05g24150.1 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.06 Archaeplastida
LOC_Os05g38190.2 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
LOC_Os07g19400.1 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.04 Archaeplastida
LOC_Os07g25500.1 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 Archaeplastida
Pp3c16_5160V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Pp3c17_5040V3.1 No alias mitochondrial editing factor 22 0.03 Archaeplastida
Pp3c27_5540V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Pp3c3_24770V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Smo101239 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.02 Archaeplastida
Smo113974 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Smo131170 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Smo151406 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Smo76226 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Smo99756 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.02 Archaeplastida
Solyc02g071300.1.1 No alias Pentatricopeptide repeat-containing protein At5g46460,... 0.01 Archaeplastida
Solyc04g009210.1.1 No alias Pentatricopeptide repeat-containing protein At5g08305... 0.03 Archaeplastida
Solyc04g016540.2.1 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.01 Archaeplastida
Zm00001e034478_P001 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.01 Archaeplastida
Zm00001e039394_P003 No alias Pentatricopeptide repeat-containing protein At5g04780,... 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008373 sialyltransferase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 120 167
IPR002885 Pentatricopeptide_repeat 523 570
IPR002885 Pentatricopeptide_repeat 324 367
IPR002885 Pentatricopeptide_repeat 420 468
IPR002885 Pentatricopeptide_repeat 224 248
IPR002885 Pentatricopeptide_repeat 194 221
IPR002885 Pentatricopeptide_repeat 297 320
IPR002885 Pentatricopeptide_repeat 598 621
IPR032867 DYW_dom 697 763
IPR028941 WHIM2_dom 991 1029
No external refs found!