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  5. Zm00001e016211_P001

Zm00001e016211_P001


Description : 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris (sp|p19684|roc5_nicsy : 154.0)


Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0000810 (LandPlants) Phylogenetic Tree(s): OG_05_0000810_tree ,
OG_06_0008513 (SeedPlants) Phylogenetic Tree(s): OG_06_0008513_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e016211_P001
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00271280 evm_27.TU.AmTr_v1... 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.02 Archaeplastida
AMTR_s00061p00032260 evm_27.TU.AmTr_v1... RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00166p00060690 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AT2G37220 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 Archaeplastida
AT3G52380 PDE322, CP33 chloroplast RNA-binding protein 33 0.04 Archaeplastida
AT4G24770 ATRBP31, CP31,... 31-kDa RNA binding protein 0.04 Archaeplastida
Cpa|evm.model.tig00000944.16 No alias RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre01.g032300 No alias No description available 0.01 Archaeplastida
Cre09.g392350 No alias Glycine-rich RNA-binding protein 2, mitochondrial... 0.02 Archaeplastida
GSVIVT01007596001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01027917001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.09 Archaeplastida
GSVIVT01032361001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Gb_05747 No alias component psPSRP2 of small ribosomal subunit proteome 0.06 Archaeplastida
Gb_32176 No alias component psPSRP2 of small ribosomal subunit proteome 0.04 Archaeplastida
Gb_33449 No alias component psPSRP2 of small ribosomal subunit proteome 0.03 Archaeplastida
Gb_39591 No alias Organelle RRM domain-containing protein 6, chloroplastic... 0.02 Archaeplastida
LOC_Os02g57010.1 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.04 Archaeplastida
LOC_Os07g06450.1 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.07 Archaeplastida
LOC_Os07g43810.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.02 Archaeplastida
LOC_Os08g44290.1 No alias RNA editing factor (CP31) 0.1 Archaeplastida
LOC_Os09g39180.1 No alias RNA editing factor (CP31) 0.07 Archaeplastida
MA_10434075g0010 No alias component psPSRP2 of small ribosomal subunit proteome 0.04 Archaeplastida
MA_185349g0010 No alias 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.02 Archaeplastida
MA_367032g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_474396g0010 No alias RNA editing factor (CP31) 0.05 Archaeplastida
MA_7844926g0010 No alias Organelle RRM domain-containing protein 1, chloroplastic... 0.05 Archaeplastida
Mp2g13800.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.03 Archaeplastida
Mp3g24820.1 No alias RNA-binding protein CP31B, chloroplastic OS=Arabidopsis... 0.02 Archaeplastida
Mp8g03420.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.04 Archaeplastida
Pp3c12_9890V3.1 No alias chloroplast RNA-binding protein 29 0.03 Archaeplastida
Pp3c8_16740V3.1 No alias chloroplast RNA-binding protein 29 0.02 Archaeplastida
Solyc01g006940.4.1 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.05 Archaeplastida
Solyc03g111840.3.1 No alias RNA editing factor (CP31) 0.05 Archaeplastida
Solyc09g007850.3.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.06 Archaeplastida
Solyc09g090960.4.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
MF GO:0098809 nitrite reductase activity IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 237 307
IPR000504 RRM_dom 146 216
No external refs found!